CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.039e-25
Identity = 54/86 (62.79%), Postives = 71/86 (82.56%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL KGAS +++KAA+K A+ G +KGIL YT++ VVS+DFVGD  SSIFDA A I L+ +F+KL++WYDNE+GYSNRV+DLI + A
Sbjct:  252 CRLQKGASMDEIKAAVKEAAAGPMKGILEYTEDQVVSSDFVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYSNRVVDLISYNA 337          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.358e-25
Identity = 54/85 (63.53%), Postives = 70/85 (82.35%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            CRLA+ ASY  +K A+K A++G + GIL YT++ VVS DF GDS SSIFDAKAGI L+ +F+KLVSWYDNE+GYS+RV+DL+ +M
Sbjct:  343 CRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRYM 427          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.358e-25
Identity = 52/85 (61.18%), Postives = 71/85 (83.53%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            CRL + ASY ++K ++K A+ G +KGILGYT++ VVS+DFVGD+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS+RV DL+ +M
Sbjct:  247 CRLTRPASYANIKESVKKAAHGPMKGILGYTEDSVVSSDFVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYM 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.358e-25
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K ASYE +K  ++ A+EG  KGI+ YTDEDVVS DF+ D+ S +FDAKAGI LS +F+KL++WYDNEWGYS RV +L++++A
Sbjct:  246 RLEKPASYEQIKEVMRKAAEGEYKGIIAYTDEDVVSTDFISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.358e-25
Identity = 52/85 (61.18%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +L K A+Y+ +K A+K A+EG +KG+LGYT++ VVS+DF+GD+ +SIFDA AGI LS  F+KL+SWYDNE+GYS RV+DLIE++A
Sbjct:  246 KLEKEATYDQIKKAVKAAAEGPMKGVLGYTEDAVVSSDFLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A Y+++K  +K A++G +KGILGYT+  VVS DF GD RSSIFDA AGI L+  F+KLV+WYDNE+GYSNRV DL+ HMA
Sbjct:  246 RLEKPAKYDEIKKVVKAAADGPMKGILGYTEHQVVSTDFNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDLMAHMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.316e-25
Identity = 51/85 (60.00%), Postives = 71/85 (83.53%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            CRLA+ A Y  +K A+K A++G + GIL YT+++VVS DF+GD+ SSIFDAKAGI L+ +F+KL+SWYDNE+GYS+RV+DL+ +M
Sbjct:  319 CRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 403          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.950e-25
Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEG-SLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            R+ KGASYE++K  IK AS+   LKGIL YTD+ VVS DF GDS SS FDA+ GI L+ +F+KLVSWYDNEWGYS RV DL+ ++A
Sbjct:  247 RIEKGASYEEIKETIKKASQTPELKGILNYTDDQVVSTDFTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYSARVCDLVSYIA 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.950e-25
Identity = 49/86 (56.98%), Postives = 70/86 (81.40%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CR+ K A+Y+++K AIK A+   L+GIL YT++++VS D +G++ SSIFDAKAGI L+ +F+KLV+WYDNEW YS RV+DLI ++A
Sbjct:  247 CRIEKSATYDEIKKAIKIAAGNELQGILSYTEDEIVSTDLIGNNHSSIFDAKAGISLNDNFVKLVAWYDNEWAYSRRVIDLISYIA 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.950e-25
Identity = 51/86 (59.30%), Postives = 71/86 (82.56%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL KGA+ +++KAA+K A+ G +KGIL YT++ VVS DF GD+ SSIFD+ A I L+ +F+KL++WYDNE+GYSNRV+DLI ++A
Sbjct:  252 CRLQKGATMDEIKAAVKEAANGPMKGILEYTEDQVVSTDFTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIA 337          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3P_ONCVO1.039e-2562.79Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3PT_RAT1.358e-2563.53Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_DANRE1.358e-2561.18Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P2_AGABI1.358e-2560.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P1_YEAST1.358e-2561.18Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P_DANRE2.316e-2563.53Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3PT_HUMAN2.316e-2560.00Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_PHARH3.950e-2563.95Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_ERYGR3.950e-2556.98Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_BRUMA3.950e-2559.30Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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