CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.960e-24
Identity = 52/85 (61.18%), Postives = 69/85 (81.18%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            R AK  +Y++VKAAIK ASEG LKGIL YT++D+VS D + D  SS FDAKAGI L+ +F+K++SWYDNE+GYS RV+DLI +++
Sbjct:  246 RFAKDVTYDEVKAAIKEASEGPLKGILAYTEDDIVSTDILTDPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDLIVYVS 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+Y+++KAA+K A  G LKGIL YT++ +VS DF G++ SSIFDA AGI L+ +F+KL++WYDNEWGYS RV+DLI  +A
Sbjct:  247 RLEKEATYDEIKAAVKEAVAGPLKGILDYTEDALVSTDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVA 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVA 268
            RL K AS +D+K  IK A+EG LKG+L YT++ VVS DFV D+ SSIFDA A I L+ +F+KL+SWYDNE+GYSNRV+DLI ++A  A
Sbjct:  254 RLEKPASLDDIKRVIKAAAEGPLKGVLAYTEDQVVSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIATKA 341          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.344e-24
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVA 268
            RL K AS +D+K  IK A++G +KGIL YT++ VVS DFV D+ SSIFDA A I L+  F+KLVSWYDNE+GYSNRV+DLI ++A  A
Sbjct:  254 RLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIATKA 341          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.344e-24
Identity = 53/88 (60.23%), Postives = 69/88 (78.41%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVA 268
            RL K AS +D+K  +K A+EG LKG+L YT++ VVS DFV D+ SSIFDA A I L+ +F+KL+SWYDNE+GYSNRV+DLI ++A  A
Sbjct:  254 RLEKPASLDDIKKVVKAAAEGPLKGVLAYTEDQVVSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIATKA 341          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.344e-24
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVA 268
            RL K AS +D+K  IK A++G +KGIL YT++ VVS DFV D+ SSIFDA A I L+  F+KLVSWYDNE+GYSNRV+DLI ++A  A
Sbjct:  254 RLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIATKA 341          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.367e-24
Identity = 49/84 (58.33%), Postives = 69/84 (82.14%), Query Frame = 2
Query:    8 LAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            L K ASY+++ A +K  S+G+LKG+LGYT++ VV+ DF GD+R+SIFDA+AGI L  +F+K+VSWYDNEWGYSN+VL++   +A
Sbjct:  248 LEKAASYDEICAEMKAQSQGALKGVLGYTEDKVVATDFRGDARTSIFDAEAGIALDGTFIKVVSWYDNEWGYSNKVLEMARVVA 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.367e-24
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLI 247
            RL K ASYED+K  +K ASEG+ KGI+ YT+E VVS DF+G   SSIFDA+AGI L+ +F+KL+ WYDNEWGYS RV DL+
Sbjct:  246 RLEKPASYEDIKKTVKEASEGAYKGIIEYTEEQVVSADFIGHHASSIFDAQAGIQLNPNFVKLIVWYDNEWGYSARVCDLL 326          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.704e-24
Identity = 48/85 (56.47%), Postives = 69/85 (81.18%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            CRL++  SY ++K A+K A+EG +KG +GYT+  VVS+DF+GD+ SS+FDA AGI  + +F+KL+SWYDNE+GYS+RV DL+ +M
Sbjct:  247 CRLSRPGSYAEIKGAVKKAAEGPMKGYVGYTEYSVVSSDFIGDTHSSMFDAGAGISFNDNFVKLISWYDNEFGYSHRVADLLLYM 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_MELGA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Meleagris gallopavo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.449e-24
Identity = 52/79 (65.82%), Postives = 63/79 (79.75%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVL 238
            CRL K A Y+D+K  +K A++G LKGILGYT++ VVS DF GDS SS FDA AGI L+  F+KLVSWYDNE+GYSNRV+
Sbjct:  156 CRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVV 234          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3P1_TRIKO1.960e-2461.18Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_OMPOL2.560e-2460.00Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P2_CAEBR2.560e-2461.36Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P3_CAEEL3.344e-2461.36Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P3_CAEBR3.344e-2460.23Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL3.344e-2461.36Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_RALSO4.367e-2458.33Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_LYOSH4.367e-2464.20Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3P_ONCMY5.704e-2456.47Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P_MELGA7.449e-2465.82Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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