CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.088e-22
Identity = 49/86 (56.98%), Postives = 66/86 (76.74%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMAL 262
            R  K A+Y ++   +K ASE  +KGILGYT+++VVS DF G   +SIFDAKAG+ L+ +F KL+SWYDNE GYS++VLDL+E +AL
Sbjct:  246 RYKKTATYNEICEVVKNASEQKMKGILGYTEDEVVSTDFNGKELTSIFDAKAGLSLNKNFAKLISWYDNETGYSSKVLDLVELVAL 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 5.338e-22
Identity = 48/84 (57.14%), Postives = 65/84 (77.38%), Query Frame = 2
Query:    8 LAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            L K A+  ++ AA+K ASEG LKGILGYT++ VVS DF G + +SI+D+KAGI L ++F K+VSWYDNEWGYSN+V ++   +A
Sbjct:  248 LEKAATMAEINAAMKEASEGELKGILGYTEDAVVSTDFRGCANTSIYDSKAGISLDSNFAKVVSWYDNEWGYSNKVCEMARVIA 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 50/86 (58.14%), Postives = 69/86 (80.23%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGS-LKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            C+L+K A+Y+ +KAA+K ASE S LK IL YT++ VVS DF+  + SS FDA+AGI L+ +F+KL++WYDNE+GYS RV+DLI +M
Sbjct:  246 CKLSKPATYDQIKAAVKRASESSALKRILEYTEDQVVSTDFLSTTCSSTFDARAGIALNDTFVKLIAWYDNEFGYSCRVVDLISYM 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = 2
Query:   11 AKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKA----GIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            A+  S +++ AA+K AS+  +KGILGYTDE++VS DF+ D+RSSI+D+KA     +     F K+VSWYDNEWGYS+RV+DL+ HMA
Sbjct:  265 ARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNE 214
            RL KGASY+++KA ++ A+ G LKGILGYTDE+VVS DF+ D+ SS+FDAKAGI L+  F+KL+SWYDNE
Sbjct:  235 RLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNE 304          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.189e-21
Identity = 49/86 (56.98%), Postives = 67/86 (77.91%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGS-LKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+YE++K  +K ASE    K  +GYT+++VVS DF+GD+ SSIFDA AGI L+ +F+KLVSWYDNE GYS RV+DL+ +++
Sbjct:  247 RLEKKATYEEIKKVMKAASESDKYKRYIGYTEDEVVSTDFIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYSTRVIDLLVYIS 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.519e-21
Identity = 48/85 (56.47%), Postives = 67/85 (78.82%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            R  K A+YED+   IKYAS   +K ++GYT++ VVS+DF G++ +SIFDAKAG+ L+ +F+KLVSWYDNE GYS++VLDL E ++
Sbjct:  246 RNKKIATYEDICQIIKYASNHDMKEVIGYTEDHVVSSDFNGNTLTSIFDAKAGLSLNNNFIKLVSWYDNECGYSSKVLDLSEFIS 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.007e-20
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 2
Query:   14 KGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKA----GIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +  S +++ AA+K AS+  +K ILGYTDE++VS DF+ DSRSSI+D+KA     +     F K+VSWYDNEWGYS+RV+DL+ HMA
Sbjct:  266 RDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 43/81 (53.09%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLI 247
            R  K A+Y ++   I+ AS+  +KGI+GYT+++VVS DF G+  +SIFDAKAG+ L+ +F+KL++WYDNE GYS++VLDL+
Sbjct:  246 RYKKSATYSEICQKIQQASQKEMKGIMGYTEDEVVSTDFNGEELTSIFDAKAGLSLNKNFVKLIAWYDNETGYSSKVLDLV 326          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEW 217
            RL K AS + +KAA+K A+EG+LKGILGYT++ VVS DF+GDSRSSIFDA A I L+  F+KLVSWYDNE+
Sbjct:  254 RLEKPASLDAIKAAVKKAAEGNLKGILGYTEDQVVSTDFLGDSRSSIFDAGACISLNPHFVKLVSWYDNEF 324          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3P_BUCAP4.088e-2256.98Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_BACFR5.338e-2257.14Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3P_ECHMU9.106e-2258.14Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3PG_TRYCR9.106e-2255.17Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P2_DROSU9.106e-2265.71Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P_DICDI1.189e-2156.98Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_BUCBP4.519e-2156.47Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PG_TRYBB1.007e-2054.65Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_BUCAI2.243e-2053.09Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P1_GLORO2.929e-2067.61Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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