CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287125_ssr296 microsatellite CX287125_ssr296:296..307. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.402e-30
Identity = 61/85 (71.76%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            R+ K ASYE +KAAIK  SEG LKGILGYT++D+VS DF+GD+RSSIFDAKAGI L+ +F+KLVSWYDNEWGYS RV+DLI H++
Sbjct:  250 RIEKAASYEQIKAAIKEESEGKLKGILGYTEDDLVSTDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDLIMHIS 334          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.402e-30
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            R+ K A+YE VKAAIK  SEG LKGILGYT++DVVS DFVGD+RSSIFDAKAGI L+ +F+KLVSWYDNEWGYS RV+DLI H+
Sbjct:  250 RIEKPATYEQVKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDLIAHI 333          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.122e-30
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+Y D+KAAIK  SEG LKGILGYT++DVVS DF+GD+RSSIFDAKAGI L+ + +KLVSWYDNEWGYS+RV+DLI HM+
Sbjct:  251 RLEKKATYADIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMS 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.956e-30
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            RL   ASY+++KAAIK ASE  +KGILGYT++ VVS+DF+GDS SSIFDA+AGI L+  F+KLVSWYDNEWGYS+RVLDLIEHM
Sbjct:  245 RLVNPASYDEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHM 328          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.085e-30
Identity = 59/87 (67.82%), Postives = 75/87 (86.21%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 265
            R+ KGASY+++K A+K ASEGSL GILGYT++D+VS D  GD+RSSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDL+ ++A +
Sbjct:  247 RIEKGASYDEIKQAVKEASEGSLNGILGYTEDDIVSTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAKI 333          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.187e-29
Identity = 60/87 (68.97%), Postives = 76/87 (87.36%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 265
            RL K  SY+D+KAA+K ASEG L+G LGYT++DVVS+DF+GD+RSSIFDAKAGI LS +F+K+VSWYDNE+GYS RV+DL++HM  V
Sbjct:  244 RLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKV 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.024e-29
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K ASEG LKGILGYT++ VVS+DF GDSRSSIFDA AGI L+ +F+KLVSWYDNE+GYSNRV+DL+ HMA
Sbjct:  245 CRLQKPAKYDDIKKVMKAASEGPLKGILGYTEDQVVSSDFNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDLLVHMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.024e-29
Identity = 61/87 (70.11%), Postives = 75/87 (86.21%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 265
            RL K  SY+D+KAA+K ASEG L+G+LGYT++DVVS DF GD+RSSIFDAKAGI LS +F+K+VSWYDNE+GYS RV+DLI+HM  V
Sbjct:  244 RLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKV 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.024e-29
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+Y+++KAAIK  SEG LKGILGYT++DVVS DF+GD+RSSIFDAKAGI L+  F+KLVSWYDNE GYS RV+DLI H+A
Sbjct:  251 RLEKAATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYSTRVVDLIVHIA 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.452e-29
Identity = 59/86 (68.60%), Postives = 74/86 (86.05%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K ASYE +KAA+K ASEG LKGILGYT++++VS+D  G++ SSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDL+ ++A
Sbjct:  246 CRLEKPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVA 331          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3PC_MESCR1.402e-3071.76Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA1.402e-3075.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC3.122e-3072.94Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PHYIN6.956e-3072.62Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_COCHE9.085e-3067.82Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_HOMAM1.187e-2968.97Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_TRISI2.024e-2970.93Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_PANVR2.024e-2970.11Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3PC_PEA2.024e-2971.76Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PODAN3.452e-2968.60Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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