CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: E4PD_SHESM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=epd PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.541e-12
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    8 LAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            L K      V   ++ A+ G   GILGYTDE +VS DF  D RSSI D       +   +KL+ W DNEWG++NR+LD    +A++AA
Sbjct:  250 LDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD--TSLAMIAA 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: E4PD_SHEON (D-erythrose-4-phosphate dehydrogenase OS=Shewanella oneidensis GN=epd PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.541e-12
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    8 LAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            L K      V   ++ A+ G   GILGYTDE +VS DF  D RSSI D       +   +KL+ W DNEWG++NR+LD    +A++AA
Sbjct:  250 LDKTVDIATVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD--TSLAMIAA 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.541e-12
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 2
Query:   14 KGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            K  +  DV  A++ AS G+L GIL YT+E +VS DF  D+ S I D        A+ +K++ W DNEWG++NR+LD    M
Sbjct:  252 KKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLDTTRAM 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.541e-12
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 2
Query:   14 KGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            K  +  DV  A++ AS G+L GIL YT+E +VS DF  D+ S I D        A+ +K++ W DNEWG++NR+LD    M
Sbjct:  252 KKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLDTTRAM 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   11 AKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLD 241
            A+  + E+V   +K A+EG LKGIL Y    +VS DF  +  SS FDA     ++ + +K+ +WYDNEWG+SNR+LD
Sbjct:  252 ARPTTVEEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATL-TKVNGTLVKVSAWYDNEWGFSNRMLD 327          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   11 AKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLD 241
            A+  + E+V   +K A+EG LKGIL Y    +VS DF  +  SS FDA     ++ + +K+ +WYDNEWG+SNR+LD
Sbjct:  252 ARPTTVEEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATL-TKVNGTLVKVSAWYDNEWGFSNRMLD 327          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 2
Query:   29 EDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIE 250
            E+V AA + A+ G +KG+L   D  +VS DF    +S+  DA   + +    +K+V+WYDNEWGYS RV+DL E
Sbjct:  293 EEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAE 366          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    8 LAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            L K      V   ++ A+ G   GILGYTDE +VS DF  D RSSI D       +   +KL+ W DNEWG++NR+LD    +A++AA
Sbjct:  250 LEKTVDIATVNHVLESAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD--TSLAMIAA 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.116e-11
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   29 EDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            E + AAIK A+ G     L Y++E +VS D V DS  SIFDA     +S + +K+VSWYDNEWGY+ ++L L E +A
Sbjct:  256 ESINAAIKEAAVGEFGETLAYSEEPLVSTDIVHDSHGSIFDAGL-TKVSGNTVKVVSWYDNEWGYTCQLLRLTELVA 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: E4PD_SHEHH (D-erythrose-4-phosphate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.116e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 2
Query:    8 LAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLD 241
            L K    E V   +K A+EGS  G++G+T+E +VS DF  D RSSI D           +KL+ W DNEWG++NR+LD
Sbjct:  250 LNKRVDIELVNRVLKQATEGSFSGVVGFTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFANRMLD 327          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
E4PD_SHESM6.541e-1243.18D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEON6.541e-1243.18D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_AERS46.541e-1243.21D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
E4PD_AERHH6.541e-1243.21D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3PP_RALEH8.543e-1245.45Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3PC_RALEH8.543e-1245.45Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3PA_CHLRE8.543e-1244.59Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
E4PD_SHEB28.543e-1243.18D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_CORGL1.116e-1148.05Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]
E4PD_SHEHH1.116e-1144.87D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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