CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.452e-29
Identity = 59/89 (66.29%), Postives = 74/89 (83.15%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            R+ KGASY+++K AIK A+EG LKG+L YT++DVVS D +G+  SSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDL+ H+A V A
Sbjct:  248 RIEKGASYDEIKQAIKEAAEGPLKGVLAYTEDDVVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAKVDA 336          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.509e-29
Identity = 60/85 (70.59%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            CRL KGASYE++KAA+K A+ G LKGIL YT+++VVS+DFVG + SSIFDAKAGI L+ +F+KLVSWYDNE+GYS RV+DLI HM
Sbjct:  248 CRLGKGASYEEIKAAVKAAASGPLKGILEYTEDEVVSSDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHM 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.509e-29
Identity = 61/87 (70.11%), Postives = 75/87 (86.21%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 265
            RL K A+Y+++KAAIK  SEG LKGI G+T++DVVS DF+GD+RSSIFDAKAGI LS +F+KLVSWYDNE GYS RV+DLI+H+A V
Sbjct:  250 RLEKEATYDEIKAAIKEESEGKLKGIPGHTEDDVVSTDFIGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHIASV 336          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 5.889e-29
Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+KAAIK ASEG +KGILGYT + VVS DF GD+ SSIFDA AGI L+ +F+KLVSWYDNE GYSNRV+DL+ HMA
Sbjct:  245 CRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 5.889e-29
Identity = 59/89 (66.29%), Postives = 75/89 (84.27%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            RL K A+Y+++K A+K ASEG LKG+LGYT++DVVS+D  GD  SSIFDAKAGI L+++F+KLVSWYDNEWGYS RV+DLI ++A V A
Sbjct:  248 RLEKAATYDEIKQAVKEASEGPLKGVLGYTEDDVVSSDLNGDPHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVIDLIAYIAQVDA 336          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.691e-29
Identity = 57/87 (65.52%), Postives = 74/87 (85.06%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 265
            R+ KGASY+++K A+K ASEG L GILGYT++D+V+ D  GD+RSSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDL+ ++A +
Sbjct:  247 RIEKGASYDEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAKI 333          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.004e-28
Identity = 58/90 (64.44%), Postives = 74/90 (82.22%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            CRL K  SY+++K A+K ASE  LKGILGYT++D+VS+D  GD  SSIFDAKAGI L+++F+KLVSWYDNEWGYS RV+DLI +++ V A
Sbjct:  246 CRLEKATSYDEIKKALKDASENELKGILGYTEDDIVSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLIAYISKVDA 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.312e-28
Identity = 61/89 (68.54%), Postives = 74/89 (83.15%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            RL KGA+YE++KA IK ASE  LKGILGYT++ VVS DFVGD++SSIFDA AGI L+  F+KLVSWYDNE+GYSNRV+DL+ + A V A
Sbjct:  247 RLEKGATYEEIKAVIKKASENELKGILGYTNDQVVSTDFVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDLLAYAAKVDA 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.713e-28
Identity = 58/84 (69.05%), Postives = 75/84 (89.29%), Query Frame = 2
Query:    8 LAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            LAK  SY+++KAA+K ASEGS+KGILGYT++DVVS+DF+GD+ SSI DA AGI L+ +F+KLVSWYDNE+GYS RV+DL+EH+A
Sbjct:  247 LAKETSYDEIKAALKKASEGSMKGILGYTEDDVVSSDFLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.713e-28
Identity = 59/85 (69.41%), Postives = 71/85 (83.53%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL KGASY+++KA +K ASE  LKGILGYT++ VVS DF+G+S SSIFDA AGI L+ +F+KLVSWYDNEWGYSNR LDL+  MA
Sbjct:  248 RLEKGASYDEIKAEVKRASENELKGILGYTEDAVVSQDFIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMA 332          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3P_COLGL3.452e-2966.29Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_SCHMA4.509e-2970.59Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3PC_PETHY4.509e-2970.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_XENLA5.889e-2970.93Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_MONAN5.889e-2966.29Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_CURLU7.691e-2965.52Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_ASPNG1.004e-2864.44Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P2_RHIRA1.312e-2868.54Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_ZYGRO1.713e-2869.05Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_USTMA1.713e-2869.41Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
back to top