CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.713e-28
Identity = 58/85 (68.24%), Postives = 71/85 (83.53%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +LAK  +YED+KAAIK ASEG +KG+LGYT++ VVS DF GD+ SSIFDA AGI LS  F+KLVSWYDNEWGYS+RV+DL+ + A
Sbjct:  248 KLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTA 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.238e-28
Identity = 56/84 (66.67%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            RL KGASY+++KA ++ A+ G LKGILGYTDE+VVS DF+ D+ SS+FDAKAGI L+  F+KL+SWYDNE+GYSNRV+DLI++M
Sbjct:  245 RLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.238e-28
Identity = 56/84 (66.67%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            RL KGASY+++KA ++ A+ G LKGILGYTDE+VVS DF+ D+ SS+FDAKAGI L+  F+KL+SWYDNE+GYSNRV+DLI++M
Sbjct:  245 RLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.923e-28
Identity = 57/89 (64.04%), Postives = 73/89 (82.02%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            R+ KGA+Y+++K AIK A+EG LKG+L YT++D VS D +G+  SSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDL+ H+A V A
Sbjct:  247 RIEKGATYDEIKQAIKEAAEGPLKGVLAYTEDDFVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAKVDA 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 2.923e-28
Identity = 56/84 (66.67%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            RL KGA+Y+++KA ++ AS+G LKGILGYTDE+VVS DF  D+ SS+FDAKAGI L+  F+KL+SWYDNE+GYSNRV+DLI++M
Sbjct:  245 RLGKGATYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.817e-28
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEG-SLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            R+  GASYED+KA +K ASE   LKGILGYTDEDVVS DF+GD+ SSIFDAKAGIGL+ +F+KL+SWYDNE+GYS RV+DLI  +A
Sbjct:  247 RIKNGASYEDIKATMKAASESPELKGILGYTDEDVVSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVA 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.817e-28
Identity = 58/85 (68.24%), Postives = 70/85 (82.35%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +LAK  +YED+KAAIK ASEG +KG+LGYT++ VVS DF GD+ SSIFDA AGI LS  F+KLVSWYDNEWGYS RV+DL+ + A
Sbjct:  248 KLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTA 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.985e-28
Identity = 56/87 (64.37%), Postives = 74/87 (85.06%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 265
            RL KGA+Y+++K A+K A++G L GILGYT++++VS D  GD+RSSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDL+ ++A V
Sbjct:  247 RLEKGATYDEIKEAVKAAADGPLNGILGYTEDEIVSTDLNGDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAKV 333          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.985e-28
Identity = 57/85 (67.06%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +L K  +Y+++K  IK ASEG LKG+LGYT++ VVS+DF+GDSRSSIFDA AGI LS  F+KLVSWYDNE+GYS RV+DL+EH+A
Sbjct:  246 KLQKETTYDEIKKVIKQASEGKLKGVLGYTEDAVVSSDFLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.503e-28
Identity = 57/89 (64.04%), Postives = 73/89 (82.02%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            RL K ASYE++ +AIK A++G LKGI+ YT ++VVS D +G++ SSIFD KAGI L+ +F+KLVSWYDNEWGYS RVLDL+EH+A V A
Sbjct:  247 RLEKAASYEEITSAIKKAADGELKGIMAYTSDEVVSTDMLGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAKVDA 335          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3P2_SCHPO1.713e-2868.24Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P2_DROPS2.238e-2866.67Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME2.238e-2866.67Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_COLLN2.923e-2864.04Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P1_DROME2.923e-2866.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_YARLI3.817e-2870.93Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P1_SCHPO3.817e-2868.24Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_PHANO4.985e-2864.37Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P2_CANGA4.985e-2867.06Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_TRIAT8.503e-2864.04Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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