CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.503e-28
Identity = 57/87 (65.52%), Postives = 70/87 (80.46%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 265
            R+ KGA+YE +K A+K A++G LKG+L YT++DVVS D  G+  SSIFDAKAGI L+  F+KLVSWYDNEWGYS RVLDLI H+A V
Sbjct:  247 RIEKGATYEQIKTAVKKAADGPLKGVLAYTEDDVVSTDMNGNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAKV 333          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.503e-28
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASE-GSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 265
            CR  K  +YED+K  IK ASE G LKGILGYT++D+VS D +GD+ SSIFDAKAGI L+  F+KLVSWYDNEWGYS RV+DLI +++ V
Sbjct:  247 CRTEKAVTYEDIKKTIKAASEEGELKGILGYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISKV 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.503e-28
Identity = 58/85 (68.24%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +L K  +Y+++KAAIK ASEG LKGILGYT++ VVS DF+GD+ SSIFDA AGI LS  F+KLVSWYDNE+GYS RV+DL+EH+A
Sbjct:  245 KLNKETTYDEIKAAIKAASEGKLKGILGYTEDAVVSTDFLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.894e-27
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K A+EG LKGILGYT++ VVS DF GDS SS FDA AGI L+ +F+KLVSWYDNE+GYSNRV+DL+ HMA
Sbjct:  245 CRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.474e-27
Identity = 55/84 (65.48%), Postives = 72/84 (85.71%), Query Frame = 2
Query:    8 LAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            L K  +YE++K+ IK ASEG LKG+LGYT++ VVS+DF+GD RSSIFDA AGI L+ SF+KL+SWYDNE+GYS RV+DL++H+A
Sbjct:  248 LKKETTYEEIKSVIKAASEGKLKGVLGYTEDAVVSSDFLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVA 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.474e-27
Identity = 54/84 (64.29%), Postives = 72/84 (85.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            RL KGASY+++KA ++ A+ G LKGILGYTDE+VVS DF+ D+ SS+F+ KAGI L+  F+KL+SWYDNE+GYSNRV+DLI++M
Sbjct:  245 RLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 2.474e-27
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            R+ KGASYE++   IK A++G LKG+L YT +DVVS+D +G++ SSIFD KAGI L+ +F+KLVSWYDNEWGYS RVLDL+ H+A V A
Sbjct:  248 RIEKGASYEEITETIKKAADGPLKGVLAYTGDDVVSSDMLGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVAKVDA 336          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.231e-27
Identity = 53/82 (64.63%), Postives = 70/82 (85.37%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLI 247
            CR  K A+Y+++KAA+K AS+G LKGILGYT++ VVS DF+GD+ SSIFDA AGI L+ +F+KL++WYDNEWGYS RV+DL+
Sbjct:  246 CRTEKSATYDEIKAAVKEASKGPLKGILGYTEDHVVSTDFIGDNHSSIFDATAGIQLNKNFVKLIAWYDNEWGYSGRVVDLL 327          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.231e-27
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            R  K  +Y+ +K A+K ASE  LKGILGYT++D+VS D  GD+RSSIFDAKAGI L+++F+KLVSWYDNEWGYS RV+DLI +++ V A
Sbjct:  247 RTEKAVTYDQIKDAVKKASENELKGILGYTEDDIVSTDLNGDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYISKVDA 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 4.220e-27
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEG-SLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            CR+ KGASYE++K  IK ASE   LKGILGYT++ VVS DF+G + SSIFDA+AGI L+A+F+KLVSWYDNE+GYS RV DLI ++A V A
Sbjct:  246 CRIEKGASYEEIKNVIKKASESPELKGILGYTEDAVVSTDFIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLISYIAGVDA 336          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3P_CRYPA8.503e-2865.52Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P_ASPOR8.503e-2865.17Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_ASHGO8.503e-2868.24Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P_COTJA1.894e-2767.44Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_PICPA2.474e-2765.48Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_DROHY2.474e-2764.29Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P2_TRIKO2.474e-2762.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P_LENED3.231e-2764.63Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P_EMENI3.231e-2762.92Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_CRYNE4.220e-2765.93Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
back to top