CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 57/89 (64.04%), Postives = 72/89 (80.90%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            R+ KGASY+++K  +K ASEG L GIL YT+++VVS+D  G+  SSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDLI ++A V A
Sbjct:  247 RIEKGASYDEIKEVVKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAKVDA 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 58/88 (65.91%), Postives = 74/88 (84.09%), Query Frame = 2
Query:    8 LAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            L K  +YED+ A +K A+EG L GILGYTDE VVS+DF+ DSRSS+FDAKAGI L+ +F+KLVSWYDNE+GYS RV+DL++H+A V+A
Sbjct:  248 LKKPTTYEDICATMKKAAEGPLAGILGYTDEAVVSSDFLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVAKVSA 335          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            CR  K  +Y+ +KAA+K ASEG LKGILGY+++ +VS D  GD RSSIFDA AGI L+  F+KL+SWYDNEWGYS RVLDLI ++A V A
Sbjct:  247 CRTEKPVTYDQIKAAVKAASEGELKGILGYSEDALVSTDLNGDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIAKVDA 336          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL KGASY+ +K  IK ASEG LKGILGYT+++VVS DF+G + SS+FDAKAGI L+  F+KL+SWYDNE+GYS RV DLI ++A
Sbjct:  247 RLEKGASYDQIKEVIKKASEGELKGILGYTEDEVVSTDFLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLIAYVA 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 52/85 (61.18%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            R+ KGA+Y+++KA +K A+ GSL GILGYT++D+VS+D  G++ SSIFDAKAGI L+ +F+KL++WYDNEWGYS RVLDL+ ++A
Sbjct:  247 RIEKGATYDEIKATVKEAANGSLAGILGYTEDDIVSSDMNGNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVA 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 57/85 (67.06%), Postives = 71/85 (83.53%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K ASYE++  AIK ASEG LKG+LGYT++ VVS DF+G S SSIFD KAGI LS +F+KL+SWYDNE+GYS +V+DL+EH+A
Sbjct:  247 RLKKAASYEEIAPAIKKASEGPLKGVLGYTEDAVVSTDFLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+YE +KAA+K A+EG +KG+LGYT++DVVS DF G+  +S+FDAKAGI L+ +F+KLVSWYDNE GYSN+VLDLI H++
Sbjct:  246 RLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+YE +KAA+K A+EG +KG+LGYT++DVVS DF G+  +S+FDAKAGI L+ +F+KLVSWYDNE GYSN+VLDLI H++
Sbjct:  246 RLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+YE +KAA+K A+EG +KG+LGYT++DVVS DF G+  +S+FDAKAGI L+ +F+KLVSWYDNE GYSN+VLDLI H++
Sbjct:  246 RLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+YE +KAA+K A+EG +KG+LGYT++DVVS DF G+  +S+FDAKAGI L+ +F+KLVSWYDNE GYSN+VLDLI H++
Sbjct:  246 RLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3P_SORMA5.512e-2764.04Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_PICAN5.512e-2765.91Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PARBA5.512e-2763.33Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_CRYCU5.512e-2765.88Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_CLAPU5.512e-2761.18Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P_CANAL5.512e-2767.06Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P1_SHIFL5.512e-2764.71Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY5.512e-2764.71Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI5.512e-2764.71Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ECOLI5.512e-2764.71Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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