CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287125_ssr296 microsatellite CX287125_ssr296:296..307. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+YE +KAA+K A+EG +KG+LGYT++DVVS DF G+  +S+FDAKAGI L+ +F+KLVSWYDNE GYSN+VLDLI H++
Sbjct:  246 RLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.512e-27
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+YE +KAA+K A+EG +KG+LGYT++DVVS DF G+  +S+FDAKAGI L+ +F+KLVSWYDNE GYSN+VLDLI H++
Sbjct:  246 RLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 7.198e-27
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K ASEG LKGILGYT+  VVS+DF  D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct:  247 CRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.198e-27
Identity = 54/84 (64.29%), Postives = 72/84 (85.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            RL K A+Y+++KA +  AS+G +KGIL YT+E+VVS DFVGD+ SS+FDAKAGI L+  F+KL+SWYDNE+GYSNRV+DLI++M
Sbjct:  245 RLGKSATYDEIKAKVLEASQGPMKGILDYTEEEVVSTDFVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 7.198e-27
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K ASEG LKGILGYT++ VVS DF  D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct:  245 CRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 7.198e-27
Identity = 57/86 (66.28%), Postives = 69/86 (80.23%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A YED+K  +K ASEG LKGILGYT++ VVS DF  DS SS FDA AGI L+ +F+KL+SWYDNE+GYSNRV+DL+ +MA
Sbjct:  245 CRLEKPAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 7.198e-27
Identity = 57/86 (66.28%), Postives = 69/86 (80.23%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K A++G LKGILGYT++ VVS DF GDS SS FDA AGI L+  F+KLVSWYDNE+GYSNRV+DL+ HMA
Sbjct:  245 CRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 9.401e-27
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K ASEG LKGILGYT++ VVS DF  D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct:  245 CRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 9.401e-27
Identity = 54/85 (63.53%), Postives = 71/85 (83.53%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +L K  +Y+++K  +K A+EG LKG+LGYT++ VVS+DF+GDS SSIFDA AGI LS  F+KLVSWYDNE+GYS RV+DL+EH+A
Sbjct:  246 KLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.401e-27
Identity = 52/85 (61.18%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +LAK A+Y+++KAA+K AS+G LK ++GYT++ VVS+DF+GD+ S+IFDA AGI LS  F+K+V+WYDNE+GYS RV+DL+EH+A
Sbjct:  245 KLAKEATYDEIKAAVKKASQGKLKNVVGYTEDSVVSSDFLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLVEHVA 329          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3P1_ECOL65.512e-2764.71Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO575.512e-2764.71Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_HUMAN7.198e-2765.12Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_GLOMM7.198e-2764.29Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_FELCA7.198e-2765.12Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_CRIGR7.198e-2766.28Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_CHICK7.198e-2766.28Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_SPECI9.401e-2765.12Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P3_YEAST9.401e-2763.53Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P1_KLULA9.401e-2761.18Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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