CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.401e-27
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+YE +KAA+K A+EG +KG+LGYT++DVVS DF G+  +S+FDAKAGI L+ +F+KLVSWYDNE GYSN+VLDLI H++
Sbjct:  246 RLEKPATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.228e-26
Identity = 55/87 (63.22%), Postives = 70/87 (80.46%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 265
            R+ K ASY+++K  IK A+ G LKGIL YT++DVVS D  GD+ SSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDL+ +++ V
Sbjct:  248 RIEKAASYDEIKEVIKKAANGPLKGILAYTEDDVVSTDMNGDNHSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLHYISKV 334          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.228e-26
Identity = 54/85 (63.53%), Postives = 71/85 (83.53%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +L K  +Y+++K  +K A+EG LKG+LGYT++ VVS+DF+GDS SSIFDA AGI LS  F+KLVSWYDNE+GYS RV+DL+EH+A
Sbjct:  246 KLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.228e-26
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K A +G LKG+LGYT+  VVS+DF GDS SS FDA AGI L+  F+KLVSWYDNE+GYSNRV+DL+ HMA
Sbjct:  275 CRLEKPAKYDDIKRVVKQACDGPLKGMLGYTEHQVVSSDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMA 360          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 118.627 bits (296), Expect = 1.604e-26
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K ASEG LKGILGYT++ VVS DF  D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct:  245 CRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 118.627 bits (296), Expect = 1.604e-26
Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            + AK  SY+++ AA+K ASEGSL GILGYTDE+VVS DF GD+ SSIFDA AGI L+++F K+V+WYDNEWGYSNRV+DL+  M
Sbjct:  251 KTAKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSM 334          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.604e-26
Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            + AK  SY+++ AA+K ASEGSL GILGYTDE+VVS DF GD+ SSIFDA AGI L+++F K+V+WYDNEWGYSNRV+DL+  M
Sbjct:  251 KTAKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSM 334          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.094e-26
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K ASY+++ A +K ASEG LKGILG+TDE VVS DF G + SSIFD+KAGI +S SF+KL++WYDNEWGYS RV DL+ + A
Sbjct:  247 RLEKEASYDEIVATVKEASEGPLKGILGFTDESVVSTDFTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDLLVYAA 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 2.094e-26
Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K ASEG LKGILGYT+  VVS+D   D+ SS FDA AGI L+  F+KL+SWYDNE+GYSNRV+DL+ HMA
Sbjct:  247 CRLEKAAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDLNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 332          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.094e-26
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            R+ KGA+Y+++K  IK ASEG L GIL YT+++VVS+D  G+  SSIFDAKAGI L+ +F+KLVSWYDNEWGYS RVLDLI +++ V A
Sbjct:  247 RIEKGATYDEIKEVIKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISKVDA 335          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3P1_ESCF39.401e-2764.71Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_SCLSC1.228e-2663.22Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P2_YEAST1.228e-2663.53Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P1_JACOR1.228e-2665.12Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P_PIG1.604e-2665.12Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P1_ANAVT1.604e-2666.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP1.604e-2666.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_SCHCO2.094e-2664.71Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_PONAB2.094e-2663.95Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_NEUCR2.094e-2662.92Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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