CX287125

Overview
NameCX287125
Unique NameCX287125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.094e-26
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +LAK A+YE++KA +K ASE  LKG++GYT++ VVS+DF+GD+ SSIFDA AGI LS  F+KLVSWYDNE+GYS RV+DL+E +A
Sbjct:  245 KLAKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVA 329          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.094e-26
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +LAK A+YE++KA +K ASE  LKG++GYT++ VVS+DF+GD+ SSIFDA AGI LS  F+KLVSWYDNE+GYS RV+DL+E +A
Sbjct:  245 KLAKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVA 329          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.735e-26
Identity = 52/85 (61.18%), Postives = 75/85 (88.24%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +L K A+Y+++KAA+K A+EG LKG++GYT++ VVS+DF+ D+RSSIFDA+AGI LS  F+KL++WYDNE+GYS RV+DL+E++A
Sbjct:  247 KLLKDATYDEIKAAVKEAAEGPLKGVVGYTEDQVVSSDFLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVA 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 2.735e-26
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            CRL K A Y+D+K  +K A++G LKGIL YT++ VVS DF GDS SS FDA AGI L+  F+KLVSWYDNE+GYSNRV+DL+ HMA
Sbjct:  245 CRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMA 330          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.735e-26
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 2
Query:    8 LAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 271
            L K  +YED+  A+K ASEG +KG+L YTDEDVVS+DFV D  S   DAKAGI LS +F+KLV+WYDNEWGYSNRV+DL  H+A  AA
Sbjct:  251 LEKATTYEDIMKALKEASEGEMKGVLAYTDEDVVSSDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAKKAA 338          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.735e-26
Identity = 56/85 (65.88%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +LAK A+Y+++KA IK ASE  LKGILGYT++ VVS+DF+GD+ SSIFDA AGI LS  F+KLV+WYDNE+GYS RV+DL+E +A
Sbjct:  245 KLAKEATYDEIKAVIKKASENELKGILGYTEDAVVSSDFLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVA 329          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.735e-26
Identity = 52/85 (61.18%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            +L K A+Y+++KAA+K  SEG LK ++GYT++ VVS+DF+GD+ S+IFDA AGI LS  F+KLV+WYDNE+GYS RV+DL+EH+A
Sbjct:  245 KLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.573e-26
Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K A+YE++  AIK AS G LKGILGYT++ VVS DF+G   SSIFD KAGI LS +F+KL+SWYDNE+GYS RV+DL+EH+A
Sbjct:  247 RLKKSATYEEISEAIKAASNGELKGILGYTEDAVVSTDFLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVA 331          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.573e-26
Identity = 54/85 (63.53%), Postives = 71/85 (83.53%), Query Frame = 2
Query:    2 CRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHM 256
            CRLA+ A Y  +K AIK A++G + GIL YT+++VVS DFVGDS SSIFDAKAGI L+ +F+KL+SWYDNE+GYS+RV+DL+ +M
Sbjct:  320 CRLAQPAPYSAIKEAIKAAAKGPMAGILAYTEDEVVSTDFVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 404          
BLAST of CX287125 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.573e-26
Identity = 58/86 (67.44%), Postives = 72/86 (83.72%), Query Frame = 2
Query:    5 RLAKGASYEDVKAAIKYASEGS-LKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 259
            RL K ASY+++KA IK ASE   LKGILGYT++ VVS DFVGD+ SSIFDAKAGI LS +F+KL+SWYDNE+GYS RV+DL+ ++A
Sbjct:  248 RLEKPASYDEIKATIKKASESEELKGILGYTEDQVVSTDFVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYVA 333          
The following BLAST results are available for this feature:
BLAST of CX287125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
G3P3_KLUMA2.094e-2664.71Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA2.094e-2664.71Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_PICCI2.735e-2661.18Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_COLLI2.735e-2665.12Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3PC_CHLRE2.735e-2664.77Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_KLULA2.735e-2665.88Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P1_KLUMA2.735e-2661.18Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_DEBHA3.573e-2665.88Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3PT_MACFA3.573e-2663.53Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P3_RHIRA3.573e-2667.44Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]

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Properties
Property NameValue
Genbank descriptionC01005A02SK Veg1 Citrus clementina cDNA clone C01005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287125 ID=CX287125; Name=CX287125; organism=Citrus clementina; type=EST; length=502bp
TTGTCGACTTGCAAAGGGTGCTTCCTATGAAGATGTCAAAGCCGCCATAA
AGTATGCATCGGAGGGTTCACTGAAAGGCATTCTTGGATACACAGATGAG
GATGTTGTCTCTAATGACTTTGTTGGAGACTCGAGGTCAAGTATATTTGA
TGCGAAGGCTGGGATTGGATTGAGTGCATCCTTCATGAAGCTTGTGTCAT
GGTACGACAACGAGTGGGGATACAGCAATCGAGTGTTGGACCTCATCGAG
CACATGGCATTGGTAGCGGCCCACAACTAAACAGTAAAATTGGTTTGCTG
CTGCTGCAATTTTAGTGCATGCTTTTGGGTTAGATTGAAAGAGTAGTTAA
AAATTTGATAGTGATTCTGCGTTTTGTTCTGAGTGACTCGCAATATGAAC
TTTGGACATCCCTTGATGCAAATTTTAAAATAATGGAATAGAATATTCAA
AGTGTATGGAGTTCATTCCACTACTACCATCTTTGTTTGGATTCTGGGCA
TC
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