CX287130

Overview
NameCX287130
Unique NameCX287130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3511 contig Ccv1_Contig3511:171..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDH_SHEAM (Malate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.256e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPKALVGII 117
[Close]
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDH_SHEWM (Malate dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.252e-28
Identity = 69/117 (58.97%), Postives = 81/117 (69.23%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF GQ     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPADSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGQDP-SPALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATCPKALIGII 117
[Close]
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDH_SHESR (Malate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.252e-28
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSQLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117
[Close]
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDH_SHESM (Malate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.252e-28
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSQLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117
[Close]
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDH_SHEON (Malate dehydrogenase OS=Shewanella oneidensis GN=mdh PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 4.252e-28
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117
[Close]
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDH_ECOLC (Malate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.252e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATS-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDH_YERE8 (Malate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G DIV+I AGV RKPGM R DLFN+NAGIV+ L E IA+ CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDATP-ALKGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPKALIGII 117
[Close]
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDH_SHISS (Malate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDH_SHIDS (Malate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX287130 vs. ExPASy Swiss-Prot
Match: MDH_SHIBS (Malate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  182 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 526
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
The following BLAST results are available for this feature:
BLAST of CX287130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_SHEAM3.256e-2858.97Malate dehydrogenase OS=Shewanella amazonensis (st... [more]
MDH_SHEWM4.252e-2858.97Malate dehydrogenase OS=Shewanella woodyi (strain ... [more]
MDH_SHESR4.252e-2858.12Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]
MDH_SHESM4.252e-2858.12Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]
MDH_SHEON4.252e-2858.12Malate dehydrogenase OS=Shewanella oneidensis GN=m... [more]
MDH_ECOLC4.252e-2857.26Malate dehydrogenase OS=Escherichia coli (strain A... [more]
MDH_YERE85.554e-2858.12Malate dehydrogenase OS=Yersinia enterocolitica se... [more]
MDH_SHISS5.554e-2857.26Malate dehydrogenase OS=Shigella sonnei (strain Ss... [more]
MDH_SHIDS5.554e-2857.26Malate dehydrogenase OS=Shigella dysenteriae serot... [more]
MDH_SHIBS5.554e-2857.26Malate dehydrogenase OS=Shigella boydii serotype 4... [more]

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Properties
Property NameValue
Genbank descriptionC01005A08SK Veg1 Citrus clementina cDNA clone C01005A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287130 ID=CX287130; Name=CX287130; organism=Citrus clementina; type=EST; length=527bp
GTTTGTTTTATCACAACTAAGTCTCCAGAAACTCAGAACCATGCAGCAGC
CAACTTCAGGAGCAAATCAACGCATTGCGAGAATCGCTGCTCATCTCCAT
CCACCAACTCTCCAGATAGAGGGAGAGAGTTCGGGTTTGGGGCGGATGGA
TTGCAGGGCAAAAGGCGGGTCGCCCGGATTCAAGGTGGCTGTATTGGGAG
CTGCTGGAGGGATTGGACAGCCTCTGGCTATGTTGATGAAGATCAATCCC
TTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAATACTCCTGGGGTTAC
TGCCGATATCAGTCACATGGATACAAATGCTGTGGTACGAGGATTTTTGG
GGCAACAGCAATTGGAGGATGCCCTCACGGGCATGGACATTGTAATCATT
CCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGTTCAA
TATCAATGCCGGAATTGTTAAGACCCTTTGTGAAGGAATAGCTAAGTGCT
GTCCAAAAGCTATTGTGAACTTGATTA
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