CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHEB9 (Glycine cleavage system H protein OS=Shewanella baltica (strain OS195) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 68/128 (53.12%), Postives = 89/128 (69.53%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWV-KHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S++   LKYASSHEW+ K E    TVGIT+HAQ+ LG++VFVELPE G +V  G    V ESVKA SD+ +PISGEVI VN  L ++P LVNSS Y EGW  +V PS  S++++L+D + Y    +E+
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGEDCAVAESVKAASDIYAPISGEVIAVNEALEDSPELVNSSAYGEGWFFRVMPSDESEVDALLDAEGYQAVIDED 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHEB8 (Glycine cleavage system H protein OS=Shewanella baltica (strain OS185) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 68/128 (53.12%), Postives = 89/128 (69.53%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWV-KHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S++   LKYASSHEW+ K E    TVGIT+HAQ+ LG++VFVELPE G +V  G    V ESVKA SD+ +PISGEVI VN  L ++P LVNSS Y EGW  +V PS  S++++L+D + Y    +E+
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGEDCAVAESVKAASDIYAPISGEVIAVNEALEDSPELVNSSAYGEGWFFRVMPSDESEVDALLDAEGYQAVIDED 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHEB2 (Glycine cleavage system H protein OS=Shewanella baltica (strain OS223) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 68/128 (53.12%), Postives = 89/128 (69.53%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWV-KHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S++   LKYASSHEW+ K E    TVGIT+HAQ+ LG++VFVELPE G +V  G    V ESVKA SD+ +PISGEVI VN  L ++P LVNSS Y EGW  +V PS  S++++L+D + Y    +E+
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGEDCAVAESVKAASDIYAPISGEVIAVNEALEDSPELVNSSAYGEGWFFRVMPSDESEVDALLDAEGYQAVIDED 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ACIBY (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain AYE) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = -1
Query:  165 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 506
            LKYA +HEWVK EG +   GITDHAQD LG++V+VE PE G+ V  G   GVVESVK  SD+++P+SG V+EVNT L + P  VN  PY +GW+ K+KP + +D+E L+    Y
Sbjct:    7 LKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVNTDLEDDPDFVNEDPYGKGWIYKIKPDNIADVEKLLTNAEY 120          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ACIBT (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=gcvH PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = -1
Query:  165 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 506
            LKYA +HEWVK EG +   GITDHAQD LG++V+VE PE G+ V  G   GVVESVK  SD+++P+SG V+EVNT L + P  VN  PY +GW+ K+KP + +D+E L+    Y
Sbjct:    7 LKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVNTDLEDDPDFVNEDPYGKGWIYKIKPDNIADVEKLLTNAEY 120          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ACIBC (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain ACICU) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = -1
Query:  165 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 506
            LKYA +HEWVK EG +   GITDHAQD LG++V+VE PE G+ V  G   GVVESVK  SD+++P+SG V+EVNT L + P  VN  PY +GW+ K+KP + +D+E L+    Y
Sbjct:    7 LKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVNTDLEDDPDFVNEDPYGKGWIYKIKPDNIADVEKLLTNAEY 120          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ACIB5 (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain AB0057) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = -1
Query:  165 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 506
            LKYA +HEWVK EG +   GITDHAQD LG++V+VE PE G+ V  G   GVVESVK  SD+++P+SG V+EVNT L + P  VN  PY +GW+ K+KP + +D+E L+    Y
Sbjct:    7 LKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVNTDLEDDPDFVNEDPYGKGWIYKIKPDNIADVEKLLTNAEY 120          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ACIB3 (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain AB307-0294) GN=gcvH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = -1
Query:  165 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 506
            LKYA +HEWVK EG +   GITDHAQD LG++V+VE PE G+ V  G   GVVESVK  SD+++P+SG V+EVNT L + P  VN  PY +GW+ K+KP + +D+E L+    Y
Sbjct:    7 LKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVNTDLEDDPDFVNEDPYGKGWIYKIKPDNIADVEKLLTNAEY 120          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PHOLL (Glycine cleavage system H protein OS=Photorhabdus luminescens subsp. laumondii GN=gcvH PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.951e-31
Identity = 66/128 (51.56%), Postives = 88/128 (68.75%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGSVA-TVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY  SHEWV+ EG+   TVGIT+HAQ+ LG++VFV+LPE G  +  G    VVESVKA SD+ +P+SG++I VN  L + P LVNS PY EGWL ++K S  S+L SL++ + Y    +EE
Sbjct:    2 SNVPAELKYVESHEWVRAEGNDEYTVGITEHAQELLGDMVFVDLPEVGDQINLGDDCAVVESVKAASDIYAPLSGKIIAVNDALNDAPELVNSEPYHEGWLFRIKASDKSELSSLLNAEGYQALLDEE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_XANP2 (Glycine cleavage system H protein OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.038e-30
Identity = 63/122 (51.64%), Postives = 89/122 (72.95%), Query Frame = -1
Query:  150 LDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCE 515
            +  ++Y   HE+V+ EG VA VGI+D+AQ  LG+VVFVELPE G  V +GG   VVESVKA S+V +P+SGEV+EVN++L   PGLVN +P  +GW +K+K S+P++L+ L++  AY  F +
Sbjct:    1 MTSVRYTKDHEYVRVEGDVAVVGISDYAQQQLGDVVFVELPEIGKVVTKGGEAAVVESVKAASEVYAPLSGEVVEVNSELEGAPGLVNEAPEGKGWFMKLKLSNPAELDELLNEHAYKDFLD 122          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_SHEB96.088e-3153.13Glycine cleavage system H protein OS=Shewanella ba... [more]
GCSH_SHEB86.088e-3153.13Glycine cleavage system H protein OS=Shewanella ba... [more]
GCSH_SHEB26.088e-3153.13Glycine cleavage system H protein OS=Shewanella ba... [more]
GCSH_ACIBY6.088e-3153.51Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_ACIBT6.088e-3153.51Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_ACIBC6.088e-3153.51Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_ACIB56.088e-3153.51Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_ACIB36.088e-3153.51Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_PHOLL7.951e-3151.56Glycine cleavage system H protein OS=Photorhabdus ... [more]
GCSH_XANP21.038e-3051.64Glycine cleavage system H protein OS=Xanthobacter ... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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