CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_LARHH (Glycine cleavage system H protein OS=Laribacter hongkongensis (strain HLHK9) GN=gcvH PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.038e-30
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = -1
Query:  159 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTK 524
            S++   LKY +SHEWV+ EG  V TVG+T HAQ+ LG++V++ELP  G  + +G G GVVESVKA SDV +PI+GEV+EVN  L   P  VN+ PY  GW  K+K  +P+D+ SL+D  AY K
Sbjct:    2 SNIPADLKYVASHEWVRDEGDGVVTVGVTFHAQELLGDIVYIELPAVGQVLAEGDGAGVVESVKAASDVYAPIAGEVLEVNADLESAPETVNADPYGAGWFFKLKLVNPADMASLLDAAAYEK 124          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_THET2 (Glycine cleavage system H protein OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = -1
Query:  144 YASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 500
            Y  +HEW   EG    VGITD+AQD LG+VV+VELPE G  V++G    VVESVK  SD+ +P++GE++EVN  L +TP LVN  PY EGW+ ++KP    DL+ L+D + Y +  E E
Sbjct:    9 YTKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDMGDLDELLDAEGYQEVLESE 127          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHESW (Glycine cleavage system H protein OS=Shewanella sp. (strain W3-18-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 67/128 (52.34%), Postives = 88/128 (68.75%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWV-KHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S++   LKYASSHEW+ K E    TVGIT+HAQ+ LG++VFVELPE G +V  G    V ESVKA SD+ +PISGEVI VN  L ++P LVNS  Y EGW  +V PS  +++++L+D + Y    +EE
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGDDCAVAESVKAASDIYAPISGEVIAVNEALEDSPELVNSDAYGEGWFFRVMPSDETEVDALLDAEGYQAVIDEE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SHEPC (Glycine cleavage system H protein OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 67/128 (52.34%), Postives = 88/128 (68.75%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWV-KHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S++   LKYASSHEW+ K E    TVGIT+HAQ+ LG++VFVELPE G +V  G    V ESVKA SD+ +PISGEVI VN  L ++P LVNS  Y EGW  +V PS  +++++L+D + Y    +EE
Sbjct:    2 SNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGDDCAVAESVKAASDIYAPISGEVIAVNEALEDSPELVNSDAYGEGWFFRVMPSDETEVDALLDAEGYQAVIDEE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PSEA6 (Glycine cleavage system H protein OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 63/128 (49.22%), Postives = 88/128 (68.75%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S++   L+YA++HEWV+ EG    TVGI++HAQ+ LG++VFVELP+ GA+V  G    V ESVKA SDV +PI GE++ VN  L ++P LVNS PY +GWL ++K     ++E L+D + Y    EEE
Sbjct:    2 SNIPSDLRYATTHEWVRPEGDGTFTVGISEHAQELLGDMVFVELPDVGATVSAGDDIAVAESVKAASDVYAPIGGEIVGVNEDLEDSPELVNSDPYGDGWLFRIKADDADEVEGLLDAEGYENSIEEE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_MARMS (Glycine cleavage system H protein OS=Marinomonas sp. (strain MWYL1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = -1
Query:  162 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYT 524
            S++ + LKYA SHEWV   G    TVGITDHAQD LG+VV+VELPE G  V     F +VESVKA SD+ +P++GEVIEVN  L + P L+N +P+E  W+ K+K S+ +DL+ L+D   Y+
Sbjct:    2 STIPENLKYADSHEWVLDNGDGTVTVGITDHAQDLLGDVVYVELPEVGTEVTATEQFSLVESVKAASDIYAPVNGEVIEVNDALNDAPELINEAPFEGAWIAKIKLSNAADLDKLLDAAGYS 123          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAES (Glycine cleavage system H protein OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30
Identity = 60/119 (50.42%), Postives = 86/119 (72.27%), Query Frame = -1
Query:  147 KYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 503
            KY+  HEWVK E +VATVGIT++AQ+ LG++VFVELPET   + +G  FG VESVK  S++ +PISG+++EVN +L ++P  VN SPYE+ W++K++ S  S LE L+    Y++   E
Sbjct:    8 KYSKEHEWVKIENNVATVGITEYAQNELGDIVFVELPETDDELNEGDTFGSVESVKTVSELYAPISGKIVEVNEELEDSPEFVNESPYEKAWMVKIEISDDSQLEELLSADQYSEMIGE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_RABIT (Glycine cleavage system H protein, mitochondrial OS=Oryctolagus cuniculus GN=GCSH PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30
Identity = 72/167 (43.11%), Postives = 99/167 (59.28%), Query Frame = -1
Query:  156 MALRMWASSTANALRISCAS-------------KTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 617
            MALR+  S  A A  +  AS             +  A    R   ++L   K+   HEW+  E  + TVGI++ AQ+ LG+VV+  LPE G  +K+   FG +ESVKA S++ SP+SGEV E+N  L E PGLVN S YE+GWLIK+  S+PS+L+ LM  +AY K+
Sbjct:    1 MALRVVRSLRAAACSLFAASAPAAPCSPLPWRLRAGAVRTLRTGPALLSVRKFTEKHEWITTENGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQDEFGALESVKAASELYSPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSNPSELDELMSEEAYEKY 167          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_KLEP3 (Glycine cleavage system H protein OS=Klebsiella pneumoniae (strain 342) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30
Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V+ G    V ESVKA SD+ +PISGE++ VN +L ++P LVNS PY +GW+ K+K S  + + +L+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYSDGWIFKIKASDEAQVAALLDATAYEALLEDE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ALKOO (Glycine cleavage system H protein OS=Alkaliphilus oremlandii (strain OhILAs) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30
Identity = 65/122 (53.28%), Postives = 85/122 (69.67%), Query Frame = -1
Query:  144 GLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 509
            GL Y+  HEWVK EG+ A +GITD AQ  LGE+VFVELPE    + QG  F VVESVKA SD  SP+SG+V+EVN +L   P L+N   +   W+IKV+ ++PS+LE L+  + Y +FCE+E
Sbjct:    6 GLLYSKDHEWVKVEGNEAYIGITDFAQHALGEIVFVELPEVDDEIAQGDAFSVVESVKAASDAYSPVSGKVLEVNEELDGAPELLNEDAF-ANWIIKVELTNPSELEGLLSDKEYAEFCEKE 126          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_LARHH1.038e-3052.85Glycine cleavage system H protein OS=Laribacter ho... [more]
GCSH_THET21.356e-3050.42Glycine cleavage system H protein OS=Thermus therm... [more]
GCSH_SHESW1.356e-3052.34Glycine cleavage system H protein OS=Shewanella sp... [more]
GCSH_SHEPC1.356e-3052.34Glycine cleavage system H protein OS=Shewanella pu... [more]
GCSH_PSEA61.356e-3049.22Glycine cleavage system H protein OS=Pseudoalterom... [more]
GCSH_MARMS1.356e-3052.46Glycine cleavage system H protein OS=Marinomonas s... [more]
GCSH_STAES1.771e-3050.42Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_RABIT1.771e-3043.11Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_KLEP31.771e-3049.22Glycine cleavage system H protein OS=Klebsiella pn... [more]
GCSH_ALKOO1.771e-3053.28Glycine cleavage system H protein OS=Alkaliphilus ... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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