CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STAEQ (Glycine cleavage system H protein OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 59/119 (49.58%), Postives = 86/119 (72.27%), Query Frame = -1
Query:  147 KYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 503
            KY+  HEWVK E +VAT+GIT++AQ+ LG++VFVELPET   + +G  FG VESVK  S++ +PISG+++EVN +L ++P  VN SPYE+ W++K++ S  S LE L+    Y++   E
Sbjct:    8 KYSKEHEWVKIENNVATIGITEYAQNELGDIVFVELPETDDELNEGDTFGSVESVKTVSELYAPISGKIVEVNEELEDSPEFVNESPYEKAWMVKIEISDDSQLEELLSADQYSEMIGE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SERP5 (Glycine cleavage system H protein OS=Serratia proteamaculans (strain 568) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = -1
Query:  147 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 524
            S+V   LKYASSHEWV+ EG+ V TVGIT+HAQ+ LG++VFV+LPE G +V  G    V ESVKA SD+ +PISGE++ VN +L  +P LVNS PY EG+L ++K S   +L  L+D  AY    +E
Sbjct:    2 SNVPTELKYASSHEWVRSEGNGVYTVGITEHAQELLGDMVFVDLPEVGRTVAAGEDCAVAESVKAASDIYAPISGEIVAVNGELESSPELVNSGPYAEGFLFQIKASDEGELAKLLDATAYQASIDE 128          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SACD2 (Glycine cleavage system H protein OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 66/129 (51.16%), Postives = 83/129 (64.34%), Query Frame = -1
Query:  141 SSVLDGLKYASSHEWVK-HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 524
            S +   LKY  SHEW +  E    T+GITDHAQ+ LG+VVFVE+PE G+ V  G   GVVESVKA SD+ SP+SGEVI VN  L + P  VNSSPY++GW  KVKP    +LE  +  + Y    E ++
Sbjct:    2 SELRSELKYLESHEWARVEEDGTVTIGITDHAQEALGDVVFVEVPEVGSQVSIGEEAGVVESVKAASDIYSPVSGEVIAVNEALEDAPETVNSSPYDDGWFFKVKPDDLDELEKALSMEDYKAAIESDD 130          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PELUB (Glycine cleavage system H protein OS=Pelagibacter ubique GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 60/123 (48.78%), Postives = 84/123 (68.29%), Query Frame = -1
Query:  138 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENA 506
            +KY+  HEW+K +G  A VGIT HA + LG++VFVELPE G+SV + G  GVVES KA SD+ +P+SGE+IE N  + + P  VNS P  E W  K+K +  S+++SLM+ + Y KF +E  +
Sbjct:    4 VKYSKEHEWIKLDGDTAVVGITQHATEMLGDIVFVELPEIGSSVVKDGNAGVVESTKAASDIYTPVSGEIIENNQAIVDDPAKVNSDPENEAWFFKLKITDKSEMDSLMNKEEYEKFSKESGS 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_MAGSM (Glycine cleavage system H protein OS=Magnetococcus sp. (strain MC-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 61/124 (49.19%), Postives = 84/124 (67.74%), Query Frame = -1
Query:  150 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCE 521
            S+   L Y   HEW++ EG    +GIT  A D LG+VVFVELP+   +++ GG FGVVESVKA SD+ SPI+G+VI  N  L E P LVN  PY +GW++++KP  P+ +++L+  QAYT + E
Sbjct:    2 SIPQELYYTKDHEWLRKEGDEVVIGITRFAADQLGDVVFVELPQVEDTLQMGGTFGVVESVKAASDLFSPITGQVIATNPDLAEAPELVNEDPYGKGWMLRLKPEDPAQMDALLTAQAYTAWLE 125          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_KLEP7 (Glycine cleavage system H protein OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LPE GA+V+ G    V ESVKA SD+ +PISGE++ VN +L ++P LVNS PY +GW+ K+K S  + + +L+D  AY    E+E
Sbjct:    2 SNVPAELKYSKEHEWLRKEAEGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYTDGWIFKIKASDEAQVAALLDAAAYEALLEDE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_BACSU (Glycine cleavage system H protein OS=Bacillus subtilis GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = -1
Query:  144 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 521
            S+   L+Y+  HEWVK EG  A +GIT  AQ  LG++VFVELPE GA +K    FG VESVK  S++ +PI+G V+EVN  L ++P  VN SPYE+ W+I V+PS  S++E LM  + Y +  +E+
Sbjct:    2 SIPKDLRYSGEHEWVKVEGEKARIGITHFAQSELGDIVFVELPEVGAEIKADEPFGSVESVKTVSELYAPINGTVVEVNEDLDDSPEFVNESPYEKAWMIVVEPSDASEIEKLMTAEQYEEMTQED 127          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_BACFN (Glycine cleavage system H protein OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gcvH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 58/114 (50.88%), Postives = 84/114 (73.68%), Query Frame = -1
Query:  165 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 506
            +KY + HEW++ EG VA VGITD+AQ+ LG++VFV++P  G +++ G  FG +E VK  SD+  P++GEV+E N  L E P LVN  PY EGWLIK+KP++ +DL++L+D + Y
Sbjct:    7 VKYTNEHEWIRLEGDVAYVGITDYAQEQLGDIVFVDIPTEGETLEAGEVFGTIEVVKTISDLFLPVAGEVVEQNPALEENPELVNKDPYGEGWLIKMKPANAADLDNLLDAEGY 120          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_MYXXD (Glycine cleavage system H protein OS=Myxococcus xanthus (strain DK 1622) GN=gcvH PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 55/115 (47.83%), Postives = 84/115 (73.04%), Query Frame = -1
Query:  162 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYT 506
            LKY   HEW + +G+   VG+T HAQ+ LG+VV+VELP+ G++V +G  FGV+ES KA S++ SP++G+V++VN  L++ P  VN+ PY  GW+++++PS P  ++ LMD  AYT
Sbjct:    9 LKYTREHEWARVQGTSVVVGVTQHAQESLGDVVYVELPKVGSTVTEGKQFGVIESTKAVSELYSPLTGKVVKVNDGLSDNPSTVNTDPYGAGWIVEIEPSDPKQVDGLMDAAAYT 123          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_CITK8 (Glycine cleavage system H protein OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=gcvH PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S+V   LKY+  HEW++ E     TVGIT+HAQ+ LG++VFV+LP+ GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+++P LVNS PY  GW+ K+K S  S+++SL+D  AY    E+E
Sbjct:    2 SNVPVELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPDVGATVAAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESEIDSLLDATAYEALLEDE 129          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_STAEQ2.313e-3049.58Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_SERP52.313e-3053.54Glycine cleavage system H protein OS=Serratia prot... [more]
GCSH_SACD22.313e-3051.16Glycine cleavage system H protein OS=Saccharophagu... [more]
GCSH_PELUB2.313e-3048.78Glycine cleavage system H protein OS=Pelagibacter ... [more]
GCSH_MAGSM2.313e-3049.19Glycine cleavage system H protein OS=Magnetococcus... [more]
GCSH_KLEP72.313e-3049.22Glycine cleavage system H protein OS=Klebsiella pn... [more]
GCSH_BACSU2.313e-3049.21Glycine cleavage system H protein OS=Bacillus subt... [more]
GCSH_BACFN2.313e-3050.88Glycine cleavage system H protein OS=Bacteroides f... [more]
GCSH_MYXXD3.021e-3047.83Glycine cleavage system H protein OS=Myxococcus xa... [more]
GCSH_CITK83.021e-3049.22Glycine cleavage system H protein OS=Citrobacter k... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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