CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PHEZH (Glycine cleavage system H protein OS=Phenylobacterium zucineum (strain HLK1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = -1
Query:  156 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 506
            +++   HEWV  +G VAT+GIT HA + LG+VVFVE+PE G  VK G  F VVESVKA SDV +P++GEV+E N  L+  P  VN+ P   GW  KV+ + P++L+ LMD  AY  F
Sbjct:    1 MRFTKDHEWVALDGDVATIGITAHAAEQLGDVVFVEVPEVGRQVKAGDAFAVVESVKAASDVYAPVTGEVVEANEALSGAPETVNAEPEAGGWFAKVRVADPAELDGLMDKAAYDAF 117          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_HALLT (Probable glycine cleavage system H protein OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=gcvH PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = -1
Query:  165 VLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 518
            V D  +Y  SHEWV   G    +G++D AQD LG+VVFVELPE G  +  G  FGVVES+KA SD+ +P+SGEV+ VN +L + P LVN  PY +GWL++V+P    D E L+D   Y
Sbjct:    5 VPDDRRYLESHEWVTTGGDTVRIGVSDFAQDELGDVVFVELPEAGDEITAGEAFGVVESIKAVSDLYAPVSGEVVAVNEELFDRPELVNEDPYGDGWLLEVEPVEGGDAEGLLDADEY 122          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_CAUCR (Glycine cleavage system H protein OS=Caulobacter crescentus GN=gcvH PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = -1
Query:  156 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 506
            +++   HEWV  EG VATVGIT +A + LG+VVFVE PE G  VKQG G  VVESVKA SDV +P+SGEVIE N +L   P  VN+ P   GW  K+K ++P++L++LMD  AY  F
Sbjct:    1 MRFTKDHEWVIVEGDVATVGITAYAAEQLGDVVFVETPEAGKVVKQGEGLAVVESVKAASDVYAPVSGEVIEGNGELAGAPETVNALPESGGWFAKIKLANPAELDALMDRDAYEAF 117          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_CAUCN (Glycine cleavage system H protein OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=gcvH PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = -1
Query:  156 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 506
            +++   HEWV  EG VATVGIT +A + LG+VVFVE PE G  VKQG G  VVESVKA SDV +P+SGEVIE N +L   P  VN+ P   GW  K+K ++P++L++LMD  AY  F
Sbjct:    1 MRFTKDHEWVIVEGDVATVGITAYAAEQLGDVVFVETPEAGKVVKQGEGLAVVESVKAASDVYAPVSGEVIEGNGELAGAPETVNALPESGGWFAKIKLANPAELDALMDRDAYEAF 117          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_BREBN (Glycine cleavage system H protein OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=gcvH PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = -1
Query:  147 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 506
            L+Y+  HEWV+ EG+ A +GIT  AQ  LG++VFVELPE GA+++Q   FG VESVK  S++ +P++G+V+EVN +L + P LVNSSPYE+ W+I V+ S  ++L+ LMD   Y    +E
Sbjct:    7 LRYSEEHEWVRVEGNKAYIGITSFAQAELGDIVFVELPEVGATIQQDEPFGSVESVKTVSELYAPVTGKVVEVNGELEDAPELVNSSPYEQAWMIVVELSDTAELDKLMDADKYEAMVKE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_BOVIN (Glycine cleavage system H protein, mitochondrial OS=Bos taurus GN=GCSH PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 62/122 (50.82%), Postives = 84/122 (68.85%), Query Frame = -1
Query:  156 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 521
            ++L   K+   HEWV  E  V TVGI++ AQ+ LG+VV+  LPE G  + +   FG +ESVKA S++ SP+SGEV E+N  L E PGLVN S YE+GWLIK+  S+PS+L+ LM  +AY K+
Sbjct:   46 ALLSVRKFTEKHEWVTTENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPSELDELMSEEAYEKY 167          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_THEP3 (Glycine cleavage system H protein OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvH PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 62/125 (49.60%), Postives = 84/125 (67.20%), Query Frame = -1
Query:  144 VLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 518
            V++GL Y+  HEWVK EG  A +GITD+AQ  LG +V++ELPE GA +  G   GVVESVKA SDV +P+ G+V+EVN  + + P LVN+ PY   W+  V+    S L++LM  + Y KF +EE
Sbjct:    3 VIEGLYYSKDHEWVKVEGDKAYIGITDYAQHSLGNIVYIELPEVGAELSAGDVLGVVESVKAASDVYTPVDGKVLEVNNAIVDDPSLVNNDPY-GSWMALVELKDKSQLDNLMTAEEYKKFLDEE 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_CELJU (Glycine cleavage system H protein OS=Cellvibrio japonicus (strain Ueda107) GN=gcvH PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 64/128 (50.00%), Postives = 82/128 (64.06%), Query Frame = -1
Query:  144 SSVLDGLKYASSHEWVK-HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 524
            S +   LKY SSHEW +  E    T+GITDHAQD LG+VV+VE PE G+ V  G   GVVESVKA SD+ S +SG+V+ VN  L + P  VNSSPY+EGW  +V+P   S+L+  +    Y +  E E
Sbjct:    2 SDIRKELKYLSSHEWARVEEDGTVTIGITDHAQDALGDVVYVETPEVGSRVSLGEEAGVVESVKAASDIYSLVSGKVVAVNELLQDAPETVNSSPYDEGWFFRVQPDDVSELDEALSADEYRELLESE 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_BURXL (Glycine cleavage system H protein OS=Burkholderia xenovorans (strain LB400) GN=gcvH PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = -1
Query:  159 SVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTK 521
            S+   LKY  SHEWV+ E     TVGITDHAQ+ LG++VF E+ E G +V  G    V+ESVKA SD+ +P+SGE+IE N+ + +TP LVNS+PY E WL K+KP++ + L+ L+D  AY+K
Sbjct:    2 SIPADLKYTESHEWVRTEADGTLTVGITDHAQEALGDIVFFEVQELGKTVSAGDTVAVIESVKAASDIYAPVSGEIIEANSAVADTPDLVNSTPY-ESWLFKIKPAADAALDRLIDADAYSK 122          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_BACLD (Glycine cleavage system H protein OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gcvH PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 60/121 (49.59%), Postives = 82/121 (67.77%), Query Frame = -1
Query:  144 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 506
            L+Y+  HEWVK EG    +GITD AQ  LG++VFVELPE G  +K    FG VESVK  S++ +PI+G+V+EVN  L ++P  VN SPYE+ W+I V+PS  S++E+LM    Y    +E+
Sbjct:    7 LRYSEEHEWVKTEGDKVRIGITDFAQSELGDIVFVELPEVGDEIKADEPFGSVESVKTVSELYAPINGKVVEVNEDLEDSPEFVNESPYEKAWMIVVEPSDASEIENLMTAGQYEDMIKED 127          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_PHEZH1.499e-2951.28Glycine cleavage system H protein OS=Phenylobacter... [more]
GCSH_HALLT1.499e-2950.85Probable glycine cleavage system H protein OS=Halo... [more]
GCSH_CAUCR1.499e-2954.70Glycine cleavage system H protein OS=Caulobacter c... [more]
GCSH_CAUCN1.499e-2954.70Glycine cleavage system H protein OS=Caulobacter c... [more]
GCSH_BREBN1.499e-2950.00Glycine cleavage system H protein OS=Brevibacillus... [more]
GCSH_BOVIN1.499e-2950.82Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_THEP31.958e-2949.60Glycine cleavage system H protein OS=Thermoanaerob... [more]
GCSH_CELJU1.958e-2950.00Glycine cleavage system H protein OS=Cellvibrio ja... [more]
GCSH_BURXL1.958e-2951.64Glycine cleavage system H protein OS=Burkholderia ... [more]
GCSH_BACLD1.958e-2949.59Glycine cleavage system H protein OS=Bacillus lich... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
back to top