CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:19..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_HALS3 (Probable glycine cleavage system H protein OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 57/118 (48.31%), Postives = 78/118 (66.10%), Query Frame = -1
Query:  165 VLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 518
            V D L+Y  SHEW+  + +   VGI++ AQD LG+VVFVELP  G ++ Q    GVVES+KA SD+ +P+SGEV  VN  LT  P LVN +P+ +GWL+++   S  DLE+ +D   Y
Sbjct:    5 VPDDLQYLESHEWI--DPATGRVGISEFAQDELGDVVFVELPSVGDALDQHDELGVVESIKAVSDLYAPVSGEVTAVNDALTNEPELVNEAPFGDGWLVEIDFDS-DDLEATLDSDDY 119          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_DESVV (Glycine cleavage system H protein OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = -1
Query:  144 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 506
            LKY+ +HEW++ EG  A +GIT  AQ+ LG++ FV+LP  G ++      G VESVKA S++ +P++GEVI VN  L   P LVN SPY EGW+++VK ++    E L+D  AY +    E
Sbjct:    7 LKYSKTHEWIRIEGDEAVIGITHFAQEQLGDLTFVDLPGVGDTLDVEQEMGSVESVKAASELYAPVAGEVIAVNDALASAPELVNQSPYTEGWMLRVKLAATP--EDLLDATAYGELVASE 125          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_DESVH (Glycine cleavage system H protein OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gcvH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = -1
Query:  144 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 506
            LKY+ +HEW++ EG  A +GIT  AQ+ LG++ FV+LP  G ++      G VESVKA S++ +P++GEVI VN  L   P LVN SPY EGW+++VK ++    E L+D  AY +    E
Sbjct:    7 LKYSKTHEWIRIEGDEAVIGITHFAQEQLGDLTFVDLPGVGDTLDVEQEMGSVESVKAASELYAPVAGEVIAVNDALASAPELVNQSPYTEGWMLRVKLAATP--EDLLDATAYGELVASE 125          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_CYAP7 (Glycine cleavage system H protein OS=Cyanothece sp. (strain PCC 7424) GN=gcvH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = -1
Query:  144 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSP-SDLESLMDPQAYTKFCEEE 512
            D L+Y  SHE+V+ +G +AT+GI+  A + LG++VF+ELPE G +V+ G  FG +ESVKA  D+  P+SG VIE N  + ++P L+   PY EGWL+K++  +P ++L+  +    Y    E E
Sbjct:    7 DDLRYLDSHEYVRLDGEIATIGISAFAIEQLGDIVFLELPEVGEAVEVGESFGHIESVKAVEDLYPPVSGTVIERNEAMIDSPELIGDDPYGEGWLLKLRVVNPDNELDDTLTADEYRSQVEGE 130          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SYNS9 (Glycine cleavage system H protein OS=Synechococcus sp. (strain CC9902) GN=gcvH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.519e-24
Identity = 51/114 (44.74%), Postives = 78/114 (68.42%), Query Frame = -1
Query:  162 KYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYT 503
            ++A SHE+   +G +  VGI+  A D LG++VFV+LP+ GAS+ +G  FG VESVKA  D+ +PI+GEV+E N  +  +P  + + P+  GWL+ V+PS P+ LE+L+D   Y+
Sbjct:   10 RFADSHEYAHLDGELIRVGISAFAVDQLGDIVFVDLPDVGASLDKGTSFGSVESVKAVEDMYAPIAGEVVERNEAVLASPEELQNDPHGAGWLLVVRPSDPAQLETLLDSATYS 123          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SYNPX (Glycine cleavage system H protein OS=Synechococcus sp. (strain WH8102) GN=gcvH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.519e-24
Identity = 50/113 (44.25%), Postives = 77/113 (68.14%), Query Frame = -1
Query:  165 KYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 503
            ++A SHE+   +G +  VGI+  A D LG++VFV+LP+ G S+ +G  FG VESVKA  D+ +P++GEV++ N  +  +P  + + P+ EGWL+ ++PS PS LE+LMD   Y
Sbjct:   10 RFADSHEYANADGELVRVGISAFAVDQLGDIVFVDLPDVGDSLDKGATFGSVESVKAVEDMYAPVAGEVVQRNEAVLASPEELQNDPHGEGWLLVLRPSDPSQLEALMDAGTY 122          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_RHIE6 (Glycine cleavage system H protein OS=Rhizobium etli (strain CIAT 652) GN=gcvH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.519e-24
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = -1
Query:  165 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 506
            LK+ + HEW++ +G VATVGIT +A + LG++VFVELPE G S  +      VESVKA S+V  P+ GE+  VN  +   P L+NS P   GW  K+K  + +D + L+D  AY
Sbjct:    2 LKFTAEHEWLELDGDVATVGITTYAVEQLGDLVFVELPEVGKSFSKNDDAATVESVKAASEVYCPLDGEITAVNDAIVADPSLINSDPQGAGWFFKLKLKNRADADGLLDEAAY 115          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_BORA1 (Glycine cleavage system H protein OS=Bordetella avium (strain 197N) GN=gcvH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.519e-24
Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = -1
Query:  165 KYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 503
            KY +SHEWVK EG V  VGIT++AQD LG++VFV     GA++K G   GVVESVKA SD+ +P+ G ++  N +L   P L+N S +   W+ K+KP + +D + L+D   Y
Sbjct:    8 KYTTSHEWVKAEGDVFVVGITENAQDQLGDLVFVGDVSVGANLKAGETAGVVESVKAASDIYAPVDGVIVAFNDELEANPNLINESAF-TAWIFKIKPLNAADADKLLDAAGY 119          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_ACICJ (Glycine cleavage system H protein OS=Acidiphilium cryptum (strain JF-5) GN=gcvH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.519e-24
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = -1
Query:  156 KYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 503
            +++  HEWV+ +G VATVGITDHAQ  LG+VVFVELPETG  V  G    VVESVKA SDV +P++G V E N  L + PG+VN+      W  ++     +  ++L+    Y  F
Sbjct:    5 RFSKDHEWVRLDGDVATVGITDHAQSALGDVVFVELPETGRHVDAGEACAVVESVKAASDVYAPLAGTVTEANGALADDPGMVNAQAESGAWFFRMTLDDRAAFDALLTADDYQAF 120          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_STRAW (Glycine cleavage system H protein OS=Streptomyces avermitilis GN=gcvH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.208e-24
Identity = 54/118 (45.76%), Postives = 80/118 (67.80%), Query Frame = -1
Query:  156 LKYASSHEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 506
            L+Y+  HEW+   E  V+TVGIT+HA + LG+VV+V+LPE G +V  G   G +ES K+ SD+ SP++GEV+E N  + + P LVNS+P+E GWL KV+ +   + + L+    YT+F
Sbjct:    7 LRYSKEHEWLSGAEDGVSTVGITEHAANALGDVVYVQLPEVGDTVTAGETCGELESTKSVSDLYSPVTGEVVEANQDVVDDPSLVNSAPFEGGWLFKVRVA--EEPKDLLSADEYTEF 122          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_HALS34.226e-2448.31Probable glycine cleavage system H protein OS=Halo... [more]
GCSH_DESVV4.226e-2445.45Glycine cleavage system H protein OS=Desulfovibrio... [more]
GCSH_DESVH4.226e-2445.45Glycine cleavage system H protein OS=Desulfovibrio... [more]
GCSH_CYAP74.226e-2442.74Glycine cleavage system H protein OS=Cyanothece sp... [more]
GCSH_SYNS95.519e-2444.74Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_SYNPX5.519e-2444.25Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_RHIE65.519e-2445.61Glycine cleavage system H protein OS=Rhizobium etl... [more]
GCSH_BORA15.519e-2446.90Glycine cleavage system H protein OS=Bordetella av... [more]
GCSH_ACICJ5.519e-2446.55Glycine cleavage system H protein OS=Acidiphilium ... [more]
GCSH_STRAW7.208e-2445.76Glycine cleavage system H protein OS=Streptomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
back to top