CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:19..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SYNPW (Glycine cleavage system H protein OS=Synechococcus sp. (strain WH7803) GN=gcvH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.606e-23
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = -1
Query:  165 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 512
            D  +YA SHE+   + +   +G++ +A D LG++VFV+LPE GA + +G  FG VESVKA  ++ +P+SG V++ N  L   P  + + P+ EGWL+ ++P  PS ++ LMD   Y
Sbjct:    7 DSYRYADSHEYAWQDAAAVRIGLSAYAVDQLGDIVFVDLPEVGAELNRGSSFGTVESVKAVEEMYAPLSGVVLQRNEALLANPEELQNDPHGEGWLLVIQPGDPSQMDQLMDAATY 122          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PYRHO (Probable glycine cleavage system H protein OS=Pyrococcus horikoshii GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.097e-23
Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = -1
Query:  156 VLDGLKYASSHEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSS-PSDLESLMDPQAYTKF 518
            V +GL Y   HEW +  E     VGITD+AQ  LG++ +VELPE G  V +G     VESVKA S+V +P+SGEVIEVN +L+++P  +N  PY   W+ K+KP +   +L+ LMD + Y ++
Sbjct:   13 VKEGLYYTKDHEWAQVLEDGTVLVGITDYAQKELGDLAYVELPEVGKEVSKGDVLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPKNLEEELKELMDAEKYAEY 134          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PROVI (Glycine cleavage system H protein OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.097e-23
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = -1
Query:  159 LKYASSHEWVK--HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTK 506
            L+Y   HEWVK   +G+ A VGITD AQ  LG++VFVEL   G  + +   FG VE+VK  +D+ +P++G ++E+N  L +    VN  PY EGW++K+K + PS L++LMD  AYT+
Sbjct:    7 LRYTKDHEWVKLLADGATALVGITDFAQSELGDIVFVELKPEGTVLGEQEIFGTVEAVKTVADLFAPVAGTILELNGVL-DAAETVNQDPYGEGWMVKMKVADPSSLDALMDAAAYTE 123          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_MYCA9 (Glycine cleavage system H protein OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.097e-23
Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = -1
Query:  165 LKYASSHEWVKHEGSVAT-VGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLES----LMDPQAY 506
            L Y   HEWV+  G     +GITD+AQ  LG+VVFV+LP+ G+ +  G  FG VES K+ SD+ +PI+ +VI  N  L   P LVNS PY EGWL+ ++ +S +DL++    L+D   Y
Sbjct:    8 LHYTEEHEWVRRTGDTTVRIGITDYAQSQLGDVVFVQLPDVGSELTAGSTFGEVESTKSVSDLFAPITAKVIAANGDLDSDPQLVNSDPYGEGWLVDLEAASAADLDAALNDLLDASGY 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_CORJK (Glycine cleavage system H protein OS=Corynebacterium jeikeium (strain K411) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.097e-23
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = -1
Query:  165 YASSHEWVKH----EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 500
            Y+  HEWV      EG    VGIT  A + LG++VFVELPE G+ V+ G  FG VES K+ SD+ +P+SGEV+ VN  L +  GL+N  PY EGWL +VK +   +   LM+ +AY
Sbjct:   10 YSEEHEWVNTSAVVEGETVRVGITHIAAEALGDIVFVELPEVGSEVEAGEAFGEVESTKSVSDIYAPVSGEVVAVNEALEDNAGLINEDPYGEGWLYEVKVTEAGE---LMEAEAY 122          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_UNCTG (Glycine cleavage system H protein OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.739e-23
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = -1
Query:  165 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 506
            LKY  +HEWVK +G+ A VGITD AQ  + +VV VELPE G  VK+     VVESVK+  D+ SP+SG+++EVN  +  +P ++N SPYE G+L  ++ +   ++  L++  +Y
Sbjct:    7 LKYTKTHEWVKIDGNKAKVGITDFAQYEITDVVHVELPEIGKQVKKAQPAAVVESVKSAFDIYSPLSGKILEVNDSVLRSPEVINQSPYENGYLFIIEFTDEKEIADLLEADSY 120          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SYNY3 (Glycine cleavage system H protein OS=Synechocystis sp. (strain PCC 6803) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.739e-23
Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = -1
Query:  180 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPY-EEGWLIKVKPSSPSDL-ESLM 512
            D L Y  SHE+V+ +G  AT+G++  A D LG++VFVELPE G  V+     G VESVKA SD+ SP++G VIE N+ L + P L+N  PY EEGWLIKV+     D  E LM
Sbjct:    7 DDLYYLDSHEYVRFDGETATIGLSAFAVDELGDIVFVELPEEGDKVEFEQSMGAVESVKAASDLYSPVTGTVIEKNSALEDQPELLNQDPYGEEGWLIKVRLDDVEDAKEGLM 119          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_MICAN (Glycine cleavage system H protein OS=Microcystis aeruginosa (strain NIES-843) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.739e-23
Identity = 47/104 (45.19%), Postives = 73/104 (70.19%), Query Frame = -1
Query:  201 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSP 512
            + L+Y  +HE+V+ EG +AT+GI+  A D LG++VF+ELPE G ++K G  FG +ESVKA  D+  P+SG V++ N  + ++P L+   P+ EGWL+KV+  +P
Sbjct:    7 EDLRYLETHEYVRLEGEIATLGISAFAVDQLGDIVFLELPELGEALKVGSSFGTIESVKAVEDLYPPVSGTVVDRNQAMIDSPELIADDPHGEGWLLKVRVENP 110          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_BEUC1 (Glycine cleavage system H protein OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.739e-23
Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = -1
Query:  144 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 521
            SV     Y + HEWV  +GSVATVGIT+ A + LG+VVFV+LP+ GA +  G   G +ES K+ SD+ +P++G VIEVN+ +   P  VNS PY  GWL +V+ ++  +   L+D  AY      E
Sbjct:    2 SVPTDRSYTAEHEWVLVDGSVATVGITEFAAEALGDVVFVQLPDVGAQLTAGEACGEIESTKSVSDLFAPVTGSVIEVNSAIDAGPETVNSDPYGAGWLFRVEIATAGE---LLDAAAYAALTSGE 124          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_SYNS3 (Glycine cleavage system H protein OS=Synechococcus sp. (strain CC9311) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.577e-23
Identity = 48/117 (41.03%), Postives = 77/117 (65.81%), Query Frame = -1
Query:  162 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYT 512
            D  ++A SHE+V+ E  +  VG++ +A D LG++VFV+LPE G  + +G  FG VESVKA  ++ +PI+G+VI+ N  +   P  + + P+ EGWL+ ++PS  + +E LMD   Y+
Sbjct:    7 DQFRFADSHEYVRQEAELVRVGLSAYAVDQLGDIVFVDLPEVGDDLSRGTSFGTVESVKAVEEMYAPITGKVIQRNEAVLANPEELQNDPHGEGWLLVIRPSELAQIEELMDSATYS 123          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_SYNPW1.606e-2340.52Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_PYRHO2.097e-2345.53Probable glycine cleavage system H protein OS=Pyro... [more]
GCSH_PROVI2.097e-2345.76Glycine cleavage system H protein OS=Prosthecochlo... [more]
GCSH_MYCA92.097e-2345.38Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_CORJK2.097e-2347.41Glycine cleavage system H protein OS=Corynebacteri... [more]
GCSH_UNCTG2.739e-2344.74Glycine cleavage system H protein OS=Uncultured te... [more]
GCSH_SYNY32.739e-2351.33Glycine cleavage system H protein OS=Synechocystis... [more]
GCSH_MICAN2.739e-2345.19Glycine cleavage system H protein OS=Microcystis a... [more]
GCSH_BEUC12.739e-2344.44Glycine cleavage system H protein OS=Beutenbergia ... [more]
GCSH_SYNS33.577e-2341.03Glycine cleavage system H protein OS=Synechococcus... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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