CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig819 contig Ccv1_Contig819:19..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_YEAST (Glycine cleavage system H protein, mitochondrial OS=Saccharomyces cerevisiae GN=GCV3 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.672e-23
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = -1
Query:  159 LKYASSHEWVK-HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPS---SPSDLESLMDPQAYTK 506
            ++Y S HEW+  H+   A VGIT +A D LG+  +VELPE G  + QG   G +ESVK+ S++  P  G V E+NT L E PG+VN  P  +GWL+K+K     +   +E LM  + Y K
Sbjct:   45 VRYTSQHEWIAVHQDKTAFVGITKYATDSLGDATYVELPEVGTEISQGESLGSIESVKSASEIYQPADGTVEEINTNLEENPGVVNEDPMGDGWLVKMKLGEGVNVEQVEGLMSLEQYEK 164          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_MYCLE (Glycine cleavage system H protein OS=Mycobacterium leprae GN=gcvH PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.672e-23
Identity = 58/125 (46.40%), Postives = 74/125 (59.20%), Query Frame = -1
Query:  165 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLES----LMDPQAY 524
            S +   L Y + HEW++        VG+TD AQ  LG+VVFV+LPE GA +  G  FG VES K+ SD+ +P+SG V  VNT L  +P LVNS PY  GWL+ V  S    LES    L+D + Y
Sbjct:    2 SDIPSDLHYTAEHEWIRRSREDTVRVGLTDFAQSTLGDVVFVQLPEVGAELAAGKSFGEVESTKSVSDLYAPVSGTVSAVNTDLEGSPQLVNSDPYGAGWLLDVHVSDVGALESAIATLLDAETY 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_MYCLB (Glycine cleavage system H protein OS=Mycobacterium leprae (strain Br4923) GN=gcvH PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.672e-23
Identity = 58/125 (46.40%), Postives = 74/125 (59.20%), Query Frame = -1
Query:  165 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLES----LMDPQAY 524
            S +   L Y + HEW++        VG+TD AQ  LG+VVFV+LPE GA +  G  FG VES K+ SD+ +P+SG V  VNT L  +P LVNS PY  GWL+ V  S    LES    L+D + Y
Sbjct:    2 SDIPSDLHYTAEHEWIRRSREDTVRVGLTDFAQSTLGDVVFVQLPEVGAELAAGKSFGEVESTKSVSDLYAPVSGTVSAVNTDLEGSPQLVNSDPYGAGWLLDVHVSDVGALESAIATLLDAETY 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PELLD (Glycine cleavage system H protein OS=Pelodictyon luteolum (strain DSM 273) GN=gcvH PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.969e-23
Identity = 50/116 (43.10%), Postives = 78/116 (67.24%), Query Frame = -1
Query:  165 LKYASSHEWVK--HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 506
            L+Y   HEW++   +G+ A VGITD AQ  LG++VFVEL   G ++K+   FG VE+VK  +D+ +P++GE++EVN  L ++   VN  PY  GW++K+K + P+ + +L+D  AY
Sbjct:    7 LRYTKDHEWIQLLDDGATALVGITDFAQSELGDIVFVELKPAGTALKEHEIFGTVEAVKTVADLFAPVAGEILEVNAGL-DSAETVNQDPYGSGWMVKMKLADPASVANLLDAAAY 121          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH1_SULSO (Probable glycine cleavage system H protein 1 OS=Sulfolobus solfataricus GN=gcvH1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.969e-23
Identity = 55/120 (45.83%), Postives = 76/120 (63.33%), Query Frame = -1
Query:  165 VLDGLKYASSHEWVK-HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPS-DLESLMDPQAY 518
            VL    Y  + EWV     +VA +GITD+AQ  L ++V +ELP+    VK G   GV+ESVKA +D+ SP+SG ++EVN KL E P ++N  PY EGW+ K+K S  S + E L+ P+ Y
Sbjct:   11 VLTDRLYTETDEWVVLSNDNVAVIGITDYAQKKLRDIVGIELPQLQKEVKAGESVGVIESVKAAADIFSPLSGIIVEVNNKLLEHPEIINKDPYGEGWIFKLKASKLSEEKEKLLSPEKY 130          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH1_DICDI (Probable glycine cleavage system H protein 1, mitochondrial OS=Dictyostelium discoideum GN=gcvH1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.969e-23
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = -1
Query:  147 KYASSHEWVKHEGSVA-TVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 503
            +Y + HEWV   GS    +GITD AQ  LG++VFVE+P+ GA++ QG    VVESVKA SD+  P+ G +  VN +L  +P LVN  P  +GW+++ K S     +SLM+   Y ++ +E
Sbjct:   26 RYTNDHEWVTSLGSQNYRLGITDFAQKQLGDIVFVEIPQIGATLSQGQPITVVESVKAASDIYIPMDGSITTVNQELESSPELVNEEPMGDGWIVEYKSSKTDQFQSLMNKAQYDEYIKE 145          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PROM9 (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain MIT 9312) GN=gcvH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.041e-22
Identity = 48/116 (41.38%), Postives = 74/116 (63.79%), Query Frame = -1
Query:  165 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 512
            D L YA +HE+V  E  +  +G+++ A D LG++VFVEL + GA++++G  FG +ESVKA  +V  P SGE++ VN  + + P L+ + P  EGWL+ +KP S   +  LM  + Y
Sbjct:    7 DNLNYADTHEYVLEEEGLLKIGVSEFAIDQLGDIVFVELADQGATLEKGETFGTIESVKAVEEVYLPFSGEIVSVNESVIDNPELLQNDPIGEGWLVILKPESKVSIADLMTSEEY 122          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_MYCS2 (Glycine cleavage system H protein OS=Mycobacterium smegmatis GN=gcvH PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.041e-22
Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = -1
Query:  165 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSS---PSDLESLMDPQAY 524
            S +   L Y S HEWV   G     VGITD+AQ  LG+VVFV+LP+ GA V  G  FG VES K+ SD+ +P++ +V+ VN  L  +P LVNS PY EGWL+ ++  +      L  L+D + Y
Sbjct:    2 SEIPADLYYTSEHEWVLRTGDDTVRVGITDYAQSALGDVVFVQLPDVGADVASGDAFGEVESTKSVSDLYAPVTAKVVAVNGDLEGSPELVNSDPYGEGWLVDLRVEAGTLDEALGGLLDAEGY 125          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_DESVM (Glycine cleavage system H protein OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=gcvH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.041e-22
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = -1
Query:  168 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPS-SPSDLESLMDPQA 521
            S+   L Y  +HEWV+ EG  A +GIT  AQ+ LG++ FV+LP  G ++  G   G VESVKA S++ SP++G V  VN  L+  P LVN SPY +GW+++VK S +P  L S  D +A
Sbjct:    2 SIPADLLYTDTHEWVRIEGDEAVIGITQFAQEQLGDLTFVDLPAVGDTLATGQEMGSVESVKAASELYSPLAGTVSAVNDALSGAPELVNQSPYTDGWMVRVKLSATPEGLLSAADYEA 120          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_THEVO (Probable glycine cleavage system H protein OS=Thermoplasma volcanium GN=gcvH PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.359e-22
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = -1
Query:  213 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVK 524
            ++V DGLKY  +HEW K +  +ATVGITD+AQ  + ++V+V+LPE G   K G     +ESVK+  DV SP++GE+ EVN +LT+ P  +N  PY   WL+K+K
Sbjct:    2 TNVPDGLKYTKTHEWYKVDNGIATVGITDYAQSQMTDIVYVDLPEVGDKKKVGDVLLTIESVKSAEDVYSPLTGEITEVNQELTKHPENINKDPY-GNWLVKMK 104          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_YEAST4.672e-2343.33Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_MYCLE4.672e-2346.40Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_MYCLB4.672e-2346.40Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_PELLD7.969e-2343.10Glycine cleavage system H protein OS=Pelodictyon l... [more]
GCSH1_SULSO7.969e-2345.83Probable glycine cleavage system H protein 1 OS=Su... [more]
GCSH1_DICDI7.969e-2343.33Probable glycine cleavage system H protein 1, mito... [more]
GCSH_PROM91.041e-2241.38Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_MYCS21.041e-2245.16Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_DESVM1.041e-2246.22Glycine cleavage system H protein OS=Desulfovibrio... [more]
GCSH_THEVO1.359e-2248.08Probable glycine cleavage system H protein OS=Ther... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
back to top