CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PROM5 (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain MIT 9515) GN=gcvH PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.775e-22
Identity = 48/116 (41.38%), Postives = 75/116 (64.66%), Query Frame = -1
Query:  165 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 512
            + LKYA +HE+VK E  +  +G+++ A D LG++VFVEL E G ++++G  FG +ESVKA  +V  P +GEV+ VN  + + P ++ + P   GWL+ +KP S   L+ LM+   Y
Sbjct:    7 NNLKYADTHEYVKEENGLLKIGVSEFAIDQLGDIVFVELVEKGTNLQKGETFGTIESVKAVEEVYLPFAGEVLSVNESVIDNPEILQNDPIGNGWLLIIKPESNVLLDELMNSDEY 122          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_CHLPD (Glycine cleavage system H protein OS=Chlorobium phaeobacteroides (strain DSM 266) GN=gcvH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.319e-22
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = -1
Query:  165 SVLDGLKYASSHEWVK--HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 521
            ++ + L+Y   HEWVK   +GS A  GITD AQ  LG++VFVEL   G  +K    FG VE+VK  +D+ +PI+GE++ +N  L +   +VN+ PY EGWL+K+K      +E L+D  +Y
Sbjct:    2 NIPEDLRYTKDHEWVKLLDDGSTALAGITDFAQSELGDIVFVELKAPGTKLKAHEVFGTVEAVKTVADLFAPIAGELVGINEAL-DAAEVVNTDPYGEGWLVKIKVDDAKAVEELLDAASY 121          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PROM2 (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain MIT 9215) GN=gcvH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22
Identity = 46/116 (39.66%), Postives = 74/116 (63.79%), Query Frame = -1
Query:  165 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 512
            D L YA +HE+V  E  +  +G+++ A D LG++VFVEL + G+++++G  FG +ESVKA  +V  P SGE++ VN  + + P L+ + P  EGWL+ +KP +   +  LM  + Y
Sbjct:    7 DNLNYADTHEYVLEEKGLLKIGVSEFAIDQLGDIVFVELADQGSTLEKGETFGTIESVKAVEEVYLPFSGEIVSVNENVVDNPELLQNDPIGEGWLVILKPKTKVSISDLMTSEEY 122          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_MYCGI (Glycine cleavage system H protein OS=Mycobacterium gilvum (strain PYR-GCK) GN=gcvH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = -1
Query:  165 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPS---DLESLMDPQAY 524
            S +   L Y   HEWV+  G     VGITD+AQ  LG+VVFV+LP+  A++  G  FG VES K+ SD+ +P++ +V+ VN  L   P LVNS PY EGWL++++  S S    L  L D + Y
Sbjct:    2 SEIPADLSYTEEHEWVQRTGDDTVRVGITDYAQAALGDVVFVQLPDVDAALTAGESFGEVESTKSVSDLYAPLTAKVVAVNGDLESNPQLVNSDPYGEGWLVELQADSASLDAALAELFDAEGY 125          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_CYAP8 (Glycine cleavage system H protein OS=Cyanothece sp. (strain PCC 8801) GN=gcvH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22
Identity = 48/117 (41.03%), Postives = 78/117 (66.67%), Query Frame = -1
Query:  165 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSS-PSDLESLMDPQAY 512
            D L+Y  SHE+V+ +G +AT+G++  A + LG++V +ELPE G ++++G  FG +ESVKA  D+  P+SG VI+ N ++ E P  +   PY +GWLIKV+ S+  ++L+  +    Y
Sbjct:    7 DDLRYLDSHEYVRLDGEIATIGLSAFAIEQLGDIVHLELPEVGEALEKGESFGAIESVKAAEDLYPPVSGTVIDRNEEMIENPDQLADDPYGDGWLIKVRVSNLDAELDDTLSASEY 123          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH1_SULAC (Probable glycine cleavage system H protein 1 OS=Sulfolobus acidocaldarius GN=gcvH1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22
Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = -1
Query:  165 VLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 518
            +L    Y  + EW+   G++ATVGITD+AQ  L ++V +ELP+ G  V  G    VVESVKA +D+ SP+SG V+EVN +L  +P  +N  PY  GW+ K+K     ++  L++ + Y
Sbjct:   11 ILKDRHYTETDEWILINGNIATVGITDYAQKKLKDIVGIELPQVGREVTIGEQVAVVESVKAAADIFSPLSGSVLEVNKELQSSPETINKDPYGRGWIFKLKIKDEKEVSKLLNFEQY 128          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_THEFY (Glycine cleavage system H protein OS=Thermobifida fusca (strain YX) GN=gcvH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.955e-22
Identity = 55/127 (43.31%), Postives = 76/127 (59.84%), Query Frame = -1
Query:  144 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVK-PSSPSDLESLMDPQAYTKFCEEE 521
            SV   L Y   HEWV     +ATVGIT  A + LG++V+VE PE G++V  G   G +ES K+ S++ SP+ GEV++VN    + P L+ S PY  GWL KV+    P+D   L+ P+ YT+  E E
Sbjct:    2 SVPAELGYTKEHEWVAINEGIATVGITAFAAEALGDIVYVEPPEVGSTVTAGESCGEIESHKSVSELYSPVDGEVVDVNQAAVDDPELIGSDPYGRGWLFKVELAEEPAD---LLTPEQYTQLTEGE 125          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_THEEB (Glycine cleavage system H protein OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvH PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22
Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = -1
Query:  168 DGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSS-PSDLESLMDPQA 512
            + L+Y  SHE+++ EG  AT+GI+  A D LG++VFVELP  G +++ G  FG +ESVKA  D+ +P+ G VI VN  + + P  + + PY EGWL+KV+ S+ P+ L S  D +A
Sbjct:    7 EDLQYLDSHEYLRLEGDTATLGISAFAVDQLGDIVFVELPAVGDALEPGERFGTIESVKAVEDLYAPLGGTVIAVNQAVIDNPEQIAADPYGEGWLVKVQVSTLPTGLLSAADYRA 122          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_VESOH (Glycine cleavage system H protein OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.746e-22
Identity = 59/123 (47.97%), Postives = 73/123 (59.35%), Query Frame = -1
Query:  159 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTK 524
            S + D  +Y  +HEW+   G    T+GITDHAQ  LG++VFVELP     V     F VVESVKA S V SP   ++IE N  L + P LVNSS Y++GWL+K K  S  D   LMD  AY +
Sbjct:    2 SEIRDDRQYTQTHEWILDNGDDTYTMGITDHAQALLGDMVFVELPNVDDEVSIDDEFCVVESVKAASGVYSPADLQIIEANEALDDEPELVNSSCYDDGWLVKFKSHSVVD---LMDSTAYAQ 121          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_PROA2 (Glycine cleavage system H protein OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=gcvH PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.746e-22
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = -1
Query:  147 LKYASSHEWVK--HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 506
            L Y   HEW+K   +G+ A VGITD AQ  LG++VFVE    G  + +   FG VE+VK  +D+ +P+ G ++EVN  L +   +VNSSPYE+GW++KV     S  ++LM    Y++   E
Sbjct:    7 LLYTKDHEWIKVLDDGTTALVGITDFAQSELGDIVFVETKPVGTELSEHDVFGTVEAVKTVADLFAPVDGVIVEVNEAL-DAAEVVNSSPYEDGWMVKVSLKDASQFDALMSAAEYSEMVGE 127          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_PROM51.775e-2241.38Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_CHLPD2.319e-2242.98Glycine cleavage system H protein OS=Chlorobium ph... [more]
GCSH_PROM23.028e-2239.66Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_MYCGI3.028e-2244.35Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_CYAP83.028e-2241.03Glycine cleavage system H protein OS=Cyanothece sp... [more]
GCSH1_SULAC3.028e-2241.53Probable glycine cleavage system H protein 1 OS=Su... [more]
GCSH_THEFY3.955e-2243.31Glycine cleavage system H protein OS=Thermobifida ... [more]
GCSH_THEEB5.165e-2244.83Glycine cleavage system H protein OS=Thermosynecho... [more]
GCSH_VESOH6.746e-2247.97Glycine cleavage system H protein OS=Vesicomyosoci... [more]
GCSH_PROA26.746e-2241.80Glycine cleavage system H protein OS=Prosthecochlo... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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