CX287134

Overview
NameCX287134
Unique NameCX287134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH2_DICDI (Glycine cleavage system H-like protein gcvH2 OS=Dictyostelium discoideum GN=gcvH2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.465e-18
Identity = 48/120 (40.00%), Postives = 73/120 (60.83%), Query Frame = -1
Query:  150 YASSHEWVK--HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATS-DVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCE 500
            Y++  EWVK   +  VATVG++      LG++ +VELP+     ++   FGV+ES  AT+  + +P+SGEV+EVN KL ++P L+N  P    W++K K S P + + LMD   Y KF +
Sbjct:   29 YSAELEWVKLSDDNKVATVGLSSFGAQRLGKINYVELPKEHRKCRREEKFGVLESSNATAFGLYAPVSGEVLEVNEKLKKSPSLLNEDP-ANNWMVKFKVSKPDEFKKLMDSNKYKKFVQ 147          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_KORCO (Probable glycine cleavage system H protein OS=Korarchaeum cryptofilum (strain OPF8) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 50/130 (38.46%), Postives = 75/130 (57.69%), Query Frame = -1
Query:  147 YASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL-------TETP-GL--VNSSPYEEGWLI--KVKPSSPSDLESLMDPQAYTKFCEE 500
            Y  +HEWVK   + A +GIT +A + LG++ F+E+   G  +K+G   GVVES K T  + +P+SGE++E+N          +E P GL  +   PYEEGW++  +VK    S+L  LM  + Y K  +E
Sbjct:    9 YTKTHEWVKISENRAIIGITSYAIEQLGDITFLEVKPKGTLIKKGEVLGVVESSKTTEKIYAPVSGEIVEINRDCGVVEEGSSEVPIGLEKIVEDPYEEGWIVVLEVKGDLSSELRDLMSSEDYLKHLKE 138          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_NOCFA (Glycine cleavage system H protein OS=Nocardia farcinica GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.008e-17
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = -1
Query:  165 DGLKYASSHEWVKHEGSVAT-VGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLE----SLMDPQAY 512
            + L+Y   HEWV+  G     VGITD+AQ  LG+VV+V+LP+       G     VES K+ SD+ +P++ +V+ VN +L+  P  +N+ PY  GWL +++ +  + L+     L+D   Y
Sbjct:    6 EDLRYTEEHEWVRRIGPTRVRVGITDYAQSQLGDVVYVQLPDEQREAAAGESIAEVESTKSVSDIYAPLAAKVVAVNEELSNAPETLNADPYGAGWLFELEVADAAALDVTLGELLDAAGY 126          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_CORA7 (Glycine cleavage system H protein OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.003e-17
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = -1
Query:  192 YASSHEWVKHE-----GSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDL 500
            Y+  HEW+        GS   +GIT  A D LGEVVF ELP  G +V+ G   G VES K+ SD+ SP++G V  VN  + +   ++N+ P+ EGWL +V+ +   +L
Sbjct:   10 YSEDHEWINATADSVVGSTVRIGITSVATDRLGEVVFAELPAVGDTVEHGETCGEVESTKSVSDLYSPVTGTVTAVNEGVHDDYAVINNDPFGEGWLFEVEVTEAGEL 117          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_TROWT (Glycine cleavage system H protein OS=Tropheryma whipplei (strain Twist) GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = -1
Query:  147 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 506
            L Y+  HEWV  +  +A VGIT +A   LG++V+++LP   A + QG   G +ES K+ S++ SP+SG VI VN  +  +PGL+NS      WL K   +   ++  LMD   Y+++ +E
Sbjct:    7 LVYSKEHEWVFIDDDIAWVGITKYAVKKLGDIVYIDLPSQDALIVQGECVGEIESTKSVSEIYSPVSGRVIAVNEDVISSPGLLNSD--SSVWLFK---AECENIPELMDWGQYSEYTKE 121          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_TROW8 (Glycine cleavage system H protein OS=Tropheryma whipplei (strain TW08/27) GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = -1
Query:  147 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 506
            L Y+  HEWV  +  +A VGIT +A   LG++V+++LP   A + QG   G +ES K+ S++ SP+SG VI VN  +  +PGL+NS      WL K   +   ++  LMD   Y+++ +E
Sbjct:    7 LVYSKEHEWVFIDDDIAWVGITKYAVKKLGDIVYIDLPSQDALIVQGECVGEIESTKSVSEIYSPVSGRVIAVNEDVISSPGLLNSD--SSVWLFK---AECENIPELMDWGQYSEYTKE 121          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH3_DICDI (Putative glycine cleavage system H protein 3 OS=Dictyostelium discoideum GN=gcvH3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 39/126 (30.95%), Postives = 73/126 (57.94%), Query Frame = -1
Query:  132 KYASSHEWVK--HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 503
            +Y+ SHEW+K  H     T+GIT +A D L  +V + LP+  +++ +   FG +ES K  +D+ S + G+ + +N+ +   P +V+ SP ++GWLIK++ +       +M    Y +F ++ N ++
Sbjct:   23 RYSESHEWIKFNHRNKTCTLGITKYASDQLKSIVNINLPDLNSTITRKQPFGNIESTKTVADLFSDVDGKAVLLNSDVIVDPTIVSHSPEDKGWLIKMESNDFESFNKMMTKSEYGQFLKDINKSN 148          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH_METFK (Glycine cleavage system H protein OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gcvH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = -1
Query:  168 SVLDGLKYASSHEWVK-HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPS-SPSDLESLMDPQA 521
            ++ + L+Y + H WV+  E      GITDHAQD LG++V+VE P+ G  +  G   G+VESVK  SD+++P+ G V  +N  L  TP  +N  PY + W+   +P  +P+ L S  + +A
Sbjct:    2 NIPENLQYTAEHLWVRPDENGHWLAGITDHAQDLLGDIVYVEAPKPGTRLSAGQPCGLVESVKTGSDLHAPLDGTVTAINEALQITPEEINDRPY-DAWIFSFEPEHAPTGLLSAAEYRA 120          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH2_SULTO (Probable glycine cleavage system H protein 2 OS=Sulfolobus tokodaii GN=gcvH2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.532e-16
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  168 WVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQA 482
            W K E   V  VGITD AQ   G+VV V L + G  V++G     +ES K    V +P SGE+I+VN  + + P LVN  PY +GWL+K+K ++P +L+ L+   A
Sbjct:   24 WAKQEAPDVIVVGITDIAQTMAGKVVKVRLKKKGTKVERGKPVATMESGKWAGPVPAPASGEIIDVNPDVEKNPVLVNQDPYGKGWLVKMKVNNPEELKQLVTGSA 129          
BLAST of CX287134 vs. ExPASy Swiss-Prot
Match: GCSH2_SULSO (Probable glycine cleavage system H protein 2 OS=Sulfolobus solfataricus GN=gcvH2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.532e-16
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  168 WVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQA 482
            W K E      VGITD AQ   G++V V + + G  V++G     +ES K    V +P++GEV+EVN +  ++P ++N  PY +GWL+K+K S+P +L+ L   QA
Sbjct:   24 WAKLESPDTIVVGITDLAQTMAGKIVKVRIKKKGTKVEKGRPVATMESGKWAGPVPAPVTGEVVEVNAEAEKSPIIINQDPYGKGWLVKMKMSNPEELKQLFSGQA 129          
The following BLAST results are available for this feature:
BLAST of CX287134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH2_DICDI3.465e-1840.00Glycine cleavage system H-like protein gcvH2 OS=Di... [more]
GCSH_KORCO5.910e-1838.46Probable glycine cleavage system H protein OS=Kora... [more]
GCSH_NOCFA1.008e-1736.36Glycine cleavage system H protein OS=Nocardia farc... [more]
GCSH_CORA75.003e-1740.74Glycine cleavage system H protein OS=Corynebacteri... [more]
GCSH_TROWT8.534e-1738.33Glycine cleavage system H protein OS=Tropheryma wh... [more]
GCSH_TROW88.534e-1738.33Glycine cleavage system H protein OS=Tropheryma wh... [more]
GCSH3_DICDI8.534e-1730.95Putative glycine cleavage system H protein 3 OS=Di... [more]
GCSH_METFK1.901e-1638.33Glycine cleavage system H protein OS=Methylobacill... [more]
GCSH2_SULTO5.532e-1642.45Probable glycine cleavage system H protein 2 OS=Su... [more]
GCSH2_SULSO5.532e-1639.62Probable glycine cleavage system H protein 2 OS=Su... [more]

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Properties
Property NameValue
Genbank descriptionC01005A12SK Veg1 Citrus clementina cDNA clone C01005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287134 ID=CX287134; Name=CX287134; organism=Citrus clementina; type=EST; length=635bp
TTTTTTTTTTTTTTTGGAGAAATGGGTCTTAATTACATGAAGATGCAGAA
TTACAACACACATAGCGAGTAAAACAAAGAGATTTATTAGTATGTTTTGG
GAAAAGAAAATGAAACAATGTGAAGATTCTAATGAGCTGCATTTTCTTCT
TCGCAAAATTTCGTGTAAGCCTGTGGATCCATCAAGGATTCTAAATCCGA
AGGGCTGCTAGGCTTCACCTTTATCAGCCATCCTTCTTCATATGGGCTTG
AATTGACCAAGCCAGGCGTTTCAGTGAGCTTGGTGTTAACCTCAATAACT
TCACCAGAAATGGGGGAATTAACGTCACTGGTTGCTTTCACACTTTCTAC
AACCCCGAAGCCGCCGCCTTGTTTGACTGAGGCACCAGTTTCTGGCAGCT
CCACAAACACTACTTCTCCAAGATGATCCTGGGCATGATCAGTGATGCCA
ACAGTAGCCACAGAGCCTTCATGCTTCACCCATTCATGCGAGGATGCATA
TTTCAACCCATCCAAGACAGAAGAGAAGCATCTGGAGAGGGCAAATGCAG
GAGTTTTGGAGGCGCAGGAAATTCTAAGAGCATTGGCAGTAGACGACGCC
CACATTCTGAGTGCCATGCCTTATTTGCTTTATTT
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