CX287176

Overview
NameCX287176
Unique NameCX287176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.158e-41
Identity = 83/183 (45.36%), Postives = 113/183 (61.75%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEW-SGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLYA++ RQ+YR C + GT+D+IFG+AA + Q C+I  R  LPGQ   +TAQ + D  + TG  I NC++   EDL    A  KSYLGRP K +S TV +ES I+D I+P GW  W   D  +DTL Y E+ N GP   T  RV WPG+ V+++ +A  FTV   + G EW+ +   P + G+
Sbjct:  425 TLYAYTHRQYYRSCVIIGTVDFIFGDAAAIFQNCDIFIRKGLPGQKNTVTAQGRVDKFQTTGFVIHNCTVAPNEDLKPVKAQFKSYLGRPWKPHSRTVVMESTIEDVIDPVGWLRWQETDFAIDTLSYAEYKNDGPSGATAARVKWPGFRVLNKEEAMKFTVGPFLQG-EWIQAIGSPVKLGL 606          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.725e-40
Identity = 83/172 (48.26%), Postives = 108/172 (62.79%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQ-FTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEW--SGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQE 509
            TLYA + RQFYRECD+YGTID+IFGNAA V Q+CNI  R P   + + VI A  + D  +NTG ++ +C I    DL        SYLGRP + YS  + +ESYIDD I   GW  W  SGD+ L TLY+GEF NYGP +    RVTW G+H +   +A  F+V +  +G++
Sbjct:  326 TLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCNIFLRRPHGVKAYNVILANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSRAIVMESYIDDAIAEGGWAGWLDSGDEVLKTLYFGEFKNYGPKARISKRVTWEGFHSIGFEEANYFSVVKRRNGED 497          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.730e-37
Identity = 79/175 (45.14%), Postives = 106/175 (60.57%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSG--DQGLDTLYYGEFNNYGPGSGTDNRVTWPGYH-VMDENDAYAFTVSQLIDGQE-WL 515
            TLY HS RQ+YR CDV GT+D+IFG   VV Q C+I  R PLP QF  ITA+   + N+NTGISI  C+I    ++ A      +YLGRP K++S TV ++S I  F+ PAGW  W+   D    T++Y E+ N GPGS    RV W GY  +  +++A  FTV   + G + W+
Sbjct:  789 TLYTHSNRQYYRNCDVTGTVDFIFGAGTVVFQGCSIRPRQPLPNQFNTITAEGTQEANQNTGISIHQCTISPNGNVTAT-----TYLGRPWKLFSKTVIMQSVIGSFVNPAGWIAWNSTYDPPPRTIFYREYKNSGPGSDLSKRVKWAGYKPISSDDEAARFTVKYFLRGDDNWI 958          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 74/178 (41.57%), Postives = 99/178 (55.62%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTSIPY 536
            TLY H+ RQFYR C V GTID++FG+A  V Q C  V R P+  Q  ++TAQ + D  E TGI I N  I          A  +++LGRP K +S T+ + + IDD I+P GW +W+    L+TL+Y E+ N G GSG   RV W G   + +  A  F     + G  W+  T IPY
Sbjct:  521 TLYVHTHRQFYRNCRVSGTIDFVFGDAKAVFQNCEFVIRRPMEHQQCIVTAQGRKDRRETTGIVIHNSRITGDASYLPVKAKNRAFLGRPWKEFSRTIIMNTEIDDVIDPEGWLKWNETFALNTLFYTEYRNRGRGSGQGRRVRWRGIKRISDRAAREFAPGNFLRGNTWIPQTRIPY 698          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 77/184 (41.85%), Postives = 106/184 (57.61%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIV-----SRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATED----LYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTS 527
            TLYAHS RQFY++C + G +D+IFGN+A V Q C+I+     S+L   G    ITA  + D +++TG    NCSI  TE+      AN    K++LGRP K +S TVF+   ++  I P GW  W+GD  L TLYYGE+ N GPGS   +RV W     + E     ++V+  I   EW  +T+
Sbjct:  421 TLYAHSLRQFYKQCRIQGNVDFIFGNSAAVFQDCDILIASKHSKLEQGGANNAITAHGRIDASQSTGFVFLNCSINGTEEYMKEFQANPEGHKNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFALKTLYYGEYKNTGPGSVRSSRVPWSS--EIPEKHVDVYSVANFIQADEWASTTA 602          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 77/178 (43.26%), Postives = 102/178 (57.30%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRL----PLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLY----ANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEW 512
            TLYAH  RQFY+ C + G +D+IFGN+A V Q C I+       P  G+   +TAQ + DP+++TG    NC I  TE+      AN    K++LGRP K YS TVF+   ++  I P GW  WSGD  L TLYYGE  N GPGS    RV+W    + DE+  + ++V+  I   EW
Sbjct:  371 TLYAHGLRQFYKNCRIQGNVDFIFGNSAAVFQDCEILIAPRQINPEKGEKNAVTAQGRIDPSQSTGFVFLNCLINGTEEYMKLFKANPKVHKNFLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSS-QIPDEH-VHVYSVANFIQADEW 546          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.189e-32
Identity = 75/187 (40.11%), Postives = 105/187 (56.15%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNEN-----TGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLY ++ RQFYR   V GT+D+IFG +A V+Q   I+ R   PGQ   +TA    D NE       GI + NC I+  ++L A+  ++KSYLGRP K ++TTV + + I D I+P GWTEW G+Q   T  Y EFNN GPG+ T  R  W         +   +TV+  +    W+   ++P Q G+
Sbjct:  407 TLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILVRKGSPGQSNYVTA----DGNEKGAAMKIGIVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPWVKV-AKSAAEVETYTVANWVGPANWIQEANVPVQLGL 588          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.853e-31
Identity = 76/187 (40.64%), Postives = 105/187 (56.15%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNEN-----TGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLY ++ RQFYR   V GT+D+IFG +A V+Q   I+ R   PGQ   +TA    D NE       GI + NC I+A ++L A+  +VKSYLGRP K ++TT  + + I D I+P GW EW G++   T  Y EFNN GPG+ T  RV W         +   FTV+  +    W+   ++P Q G+
Sbjct:  403 TLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILCRKGSPGQTNHVTA----DGNEKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPW-AKMAKSAAEVERFTVANWLTPANWIQEANVPVQLGL 584          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29
Identity = 77/189 (40.74%), Postives = 102/189 (53.97%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNEN-----TGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWP--GYHVMDENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLY ++ RQFYR   V GT+D+IFG +A V+Q   IV R    GQF  +TA    D NE       GI +QNC I+  + L A    V+SYLGRP K +STTV + S I D I P GW  W G+    +  Y E+NN GPG+ T+ RV W        + ND   FTV+  +    W+   ++P   G+
Sbjct:  414 TLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKGNKGQFNTVTA----DGNEKGLAMKIGIVLQNCRIVPDKKLAAERLIVESYLGRPWKKFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNWVKIARSAAEVND---FTVANWLGPINWIQEANVPVTLGL 595          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.591e-29
Identity = 71/183 (38.80%), Postives = 100/183 (54.64%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNE-NTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTSIPYQDGI 548
            TLY ++ RQFYR   V GT+D+I G +A V+Q   I+ R   PGQ   +TA  K        GI + NC I+A ++L A+  +VKSYLGRP K ++TT  + + I D I+P GW EW G++   T  Y EFNN GPG+    RV W         +   FTV+  +    W+   ++  Q G+
Sbjct:  390 TLYVNNGRQFYRNIVVSGTVDFINGKSATVIQNSLILCRKGSPGQTNHVTADGKQKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPW-AKMAKSAAEVERFTVANWLTPANWIQEANVTVQLGL 571          
The following BLAST results are available for this feature:
BLAST of CX287176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PME45_ARATH1.158e-4145.36Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME54_ARATH3.725e-4048.26Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME26_ARATH1.730e-3745.14Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME43_ARATH2.499e-3641.57Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME64_ARATH3.608e-3541.85Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME51_ARATH3.055e-3443.26Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME37_ARATH2.189e-3240.11Probable pectinesterase/pectinesterase inhibitor V... [more]
PME_BRANA1.853e-3140.64Probable pectinesterase/pectinesterase inhibitor O... [more]
PME5_ARATH2.959e-2940.74Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME_BRACM6.591e-2938.80Pectinesterase/pectinesterase inhibitor (Fragment)... [more]

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Properties
Property NameValue
Genbank descriptionC01005E08SK Veg1 Citrus clementina cDNA clone C01005E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287176 ID=CX287176; Name=CX287176; organism=Citrus clementina; type=EST; length=687bp
ATACGTTATATGCACACTCATTTCGTCAGTTTTACCGAGAGTGCGACGTA
TACGGAACCATAGACTACATATTTGGTAACGCTGCAGTGGTTCTCCAGGC
ATGTAACATCGTATCTAGACTGCCATTACCAGGGCAATTCACAGTCATCA
CAGCACAATTAAAAGACGACCCGAATGAAAACACTGGAATCTCAATCCAA
AATTGTTCAATTTTGGCTACTGAAGATCTGTATGCAAATTCTGCAAGTGT
TAAAAGTTACCTAGGCAGGCCCTTGAAGATCTACTCAACAACAGTTTTTC
TTGAGTCCTACATTGATGACTTTATTGAGCCAGCCGGGTGGACCGAGTGG
TCAGGTGATCAAGGCTTGGACACATTGTACTACGGAGAGTTCAATAATTA
CGGTCCAGGTTCCGGGACCGATAATCGGGTCACTTGGCCCGGGTATCATG
TCATGGATGAGAATGATGCATATGCTTTTACTGTATCACAGTTAATTGAT
GGTCAGGAGTGGCTGGATTCAACTTCAATTCCTTACCAAGATGGGATTTA
ATCACCATCTTTTGTGAAAATTAATTTTTATTTTTATTAAGTTCGAATGT
AACTAGAACTCTTGTTTGTATTAGTTTGGTTTCTAAAGTAGATATTATGA
AATTAGGTTGACGTAAGGAAATGATTTGATCTGTCAA
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