CX287176

Overview
NameCX287176
Unique NameCX287176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 49/172 (28.49%), Postives = 81/172 (47.09%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLD-TLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWL 515
            TL   + R +++EC + G+ID+IFGN   + + C + S   +  +F  I A  +  P E TG +   C +  T  L         Y+GR +  YS  V+  +Y D  +   GW +W        T ++G +N YGPG+     V+W     +D   A+ F     ++G+ W+
Sbjct:  200 TLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHS---IASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTGPL---------YVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATRGVSWA--RALDYESAHPFIAKSFVNGRHWI 357          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 51/172 (29.65%), Postives = 78/172 (45.35%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNI-VSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWL 515
            TL+ +  R +Y EC + G+ID+IFG A  +   C I V        +  ITA  ++   E TG       +   +++Y         LGR    YS  +F ++Y+   + P GWT WS       LY+GE+  +GPG+    R  W     + + +  +F     IDG  WL
Sbjct:  176 TLFDNKGRHYYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKPYGSITAHHRESAEEKTGYVFIRGKVYGIDEVY---------LGRAKGPYSRVIFAKTYLSKTVVPDGWTNWSYHGSTQNLYHGEYKCHGPGAERQKRSDWA--KDLTKQEVESFLSIDFIDGTSWL 336          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQE---WL 515
            TLY H  +Q+ ++C + G++D+IFGN+  +L+ C+I  +         ITAQ +    E+TG     C I        N  S   YLGRP   +   V   +Y+D  I   GW  W   +   +  + E+  +GPGS +  RV W    +MD+ +A  F     +D ++   WL
Sbjct:  145 TLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQ-----GFITAQSRKSSQESTGYVFLRCVITG------NGQSGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNWGNAENERSACFYEYRCFGPGSCSSERVPW-SRELMDD-EAGHFVHHSFVDPEQDRPWL 305          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 44/147 (29.93%), Postives = 67/147 (45.58%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQAC--NIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTW 437
            TL+    R ++  C + G +D+I G+   + Q+C   ++     PG    ITAQ + + N+  G    NC +             K+YLGR  + YS  +F  S + D ++P GW EW+       L Y E   +G GS T  R  W
Sbjct:  162 TLWDSDGRHYFHRCTIQGAVDFILGSGQSIYQSCVIQVLGGQLGPGVTGYITAQGRTNANDANGFVFINCLV---------HGFGKAYLGRAWRPYSRVIFYNSNLTDVVDPLGWWEWNYQGYEKQLTYAEHGCFGSGSNTSRRAKW 299          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 47/179 (26.26%), Postives = 77/179 (43.02%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQAC--NIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWLDSTSIP 533
            TL+    R ++  C + G +D+IFG    + Q+C   ++     PG    ITAQ + +P +  G    NC +  T           ++LGRP + YS  +F  S + D + P GW  W+     + L + E   +G G+    RV W     + E+          I+   W++   IP
Sbjct:  167 TLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQSCVIQVLGGQLEPGLAGYITAQGRTNPYDANGFIFINCLVYGTG---------MAFLGRPWRGYSRVIFYNSNLTDVVVPEGWDAWNFVGHENQLVFAEHGCFGSGANIGRRVKW--VKKLSESAIQNLADLSFINRGGWVEDLPIP 334          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 51/173 (29.48%), Postives = 81/173 (46.82%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQ-FTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLD-TLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAYAFTVSQLIDGQEWL 515
            TL       F+++C + GT D+IFG  A +     + ++L   G    VITAQ +    E  G +  +C +  T            YLGR    +   V+  + +   + P+GW E + ++G D T++YGE+  +GPGS  + RV  P    +D+N+   F     I G  WL
Sbjct:  198 TLCDDKGNHFFKDCYIEGTYDFIFGRGASLY----LNTQLHAVGDGLRVITAQGRQSATEQNGYTFVHCKVTGT--------GTGIYLGRSWMSHPKVVYAFTEMTSVVNPSGWRE-NLNRGYDKTVFYGEYKCFGPGSHLEKRV--PYTQDIDKNEVTPFLTLGYIKGSTWL 355          
BLAST of CX287176 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 46/180 (25.56%), Postives = 78/180 (43.33%), Query Frame = 3
Query:    3 TLYAHSFRQFYRECDVYGTIDYIFGNAAVVLQACNI---VSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRPLKIYSTTVFLESYIDDFIEPAGWTEWSGDQGLDTLYYGEFNNYGPGSGTDNRVTWPGYHVMDENDAY----AFTVSQLIDGQEWLDS 521
            T++ +  R  ++ C + G ID+IFG+   V + C+I      L     F  ITAQ +   ++ +G      S+         S S   YLGR    +S  +F+++ +   + P GW  W       +  Y E    G GS    RV W     +D+  ++     F++S  ID  +W+ +
Sbjct:  124 TVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSSDSDPSGFVFLRGSV---------SGSTSVYLGRAYGPFSRVIFIQTDLSSVVHPEGWYSWHYGGYEMSFTYAEVECKGAGSDMSRRVPW-----IDKLHSFYTKQQFSISNFIDQDQWISN 289          
The following BLAST results are available for this feature:
BLAST of CX287176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PME68_ARATH5.235e-1828.49Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME67_ARATH3.393e-1729.65Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME31_ARATH4.899e-1630.46Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME55_ARATH1.576e-1429.93Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME29_ARATH5.989e-1426.26Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME50_ARATH2.516e-1229.48Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME52_ARATH4.745e-1125.56Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC01005E08SK Veg1 Citrus clementina cDNA clone C01005E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287176 ID=CX287176; Name=CX287176; organism=Citrus clementina; type=EST; length=687bp
ATACGTTATATGCACACTCATTTCGTCAGTTTTACCGAGAGTGCGACGTA
TACGGAACCATAGACTACATATTTGGTAACGCTGCAGTGGTTCTCCAGGC
ATGTAACATCGTATCTAGACTGCCATTACCAGGGCAATTCACAGTCATCA
CAGCACAATTAAAAGACGACCCGAATGAAAACACTGGAATCTCAATCCAA
AATTGTTCAATTTTGGCTACTGAAGATCTGTATGCAAATTCTGCAAGTGT
TAAAAGTTACCTAGGCAGGCCCTTGAAGATCTACTCAACAACAGTTTTTC
TTGAGTCCTACATTGATGACTTTATTGAGCCAGCCGGGTGGACCGAGTGG
TCAGGTGATCAAGGCTTGGACACATTGTACTACGGAGAGTTCAATAATTA
CGGTCCAGGTTCCGGGACCGATAATCGGGTCACTTGGCCCGGGTATCATG
TCATGGATGAGAATGATGCATATGCTTTTACTGTATCACAGTTAATTGAT
GGTCAGGAGTGGCTGGATTCAACTTCAATTCCTTACCAAGATGGGATTTA
ATCACCATCTTTTGTGAAAATTAATTTTTATTTTTATTAAGTTCGAATGT
AACTAGAACTCTTGTTTGTATTAGTTTGGTTTCTAAAGTAGATATTATGA
AATTAGGTTGACGTAAGGAAATGATTTGATCTGTCAA
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