CX287190

Overview
NameCX287190
Unique NameCX287190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: CATR_SPESI (Caltractin (Fragment) OS=Spermatozopsis similis PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.197e-38
Identity = 78/142 (54.93%), Postives = 99/142 (69.72%), Query Frame = 1
Query:   16 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            LT++Q  E +EAF LFD DG G I  KEL   M +LG  P + E+Q MI+++D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD DQ G I+   L+ V   LGE LTDEE+ EMI EAD DGDG+IN EEF ++M
Sbjct:    1 LTEEQKQEXREAFDLFDTDGSGTIDAKELKVXMXALGFEPKKEEIQKMISDIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDQTGKITFKNLKRVAKELGENLTDEEIQEMIDEADRDGDGEINEEEFFRIM 142          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC2_ANGAN (Troponin C, skeletal muscle OS=Anguilla anguilla PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.453e-38
Identity = 77/148 (52.03%), Postives = 109/148 (73.65%), Query Frame = 1
Query:    7 RDQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            R  L+++ I+EFK AF +FD DG G I+TKELGTVMR LGQNPT  EL  +I EVD DG+GTIDF EFL +M R++K+     SEEEL E FRVFDK+ +GFI   E   ++ + GE +++EE+DE++ + D + DG+I+++E++K+M
Sbjct:    9 RSFLSEEMIAEFKAAFDMFDTDGGGDISTKELGTVMRMLGQNPTREELDAIIEEVDEDGSGTIDFEEFLVMMVRQLKEDQAGKSEEELAEFFRVFDKNGDGFIDREEFGEILRSSGEPVSEEEIDELMADGDKNNDGKIDFDEWLKMM 156          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC2_MOUSE (Troponin C, skeletal muscle OS=Mus musculus GN=Tnnc2 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.302e-38
Identity = 75/148 (50.68%), Postives = 108/148 (72.97%), Query Frame = 1
Query:    7 RDQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            R  L+++ I+EFK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +T+EE++ ++++ D + DG+I+++EF+K+M
Sbjct:    9 RSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTEEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: CATR_SCHDU (Caltractin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.302e-38
Identity = 76/142 (53.52%), Postives = 99/142 (69.72%), Query Frame = 1
Query:   16 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            LT++Q  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI ++D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD D+ G IS   L+ V   LGE +TDEE+ EMI EAD DGDG++N EEF ++M
Sbjct:   21 LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 162          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC2_HUMAN (Troponin C, skeletal muscle OS=Homo sapiens GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.215e-37
Identity = 75/148 (50.68%), Postives = 107/148 (72.30%), Query Frame = 1
Query:    7 RDQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            R  L+++ I+EFK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I   EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:    9 RSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDPEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 76/148 (51.35%), Postives = 111/148 (75.00%), Query Frame = 1
Query:   10 DQLTDDQISEFKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 76/148 (51.35%), Postives = 111/148 (75.00%), Query Frame = 1
Query:   10 DQLTDDQISEFKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 76/148 (51.35%), Postives = 111/148 (75.00%), Query Frame = 1
Query:   10 DQLTDDQISEFKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.072e-37
Identity = 76/148 (51.35%), Postives = 111/148 (75.00%), Query Frame = 1
Query:   10 DQLTDDQISEFKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.072e-37
Identity = 76/148 (51.35%), Postives = 111/148 (75.00%), Query Frame = 1
Query:   10 DQLTDDQISEFKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
The following BLAST results are available for this feature:
BLAST of CX287190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 484
Match NameE-valueIdentityDescription
CATR_SPESI3.197e-3854.93Caltractin (Fragment) OS=Spermatozopsis similis PE... [more]
TNNC2_ANGAN5.453e-3852.03Troponin C, skeletal muscle OS=Anguilla anguilla P... [more]
TNNC2_MOUSE9.302e-3850.68Troponin C, skeletal muscle OS=Mus musculus GN=Tnn... [more]
CATR_SCHDU9.302e-3853.52Caltractin OS=Scherffelia dubia PE=2 SV=1[more]
TNNC2_HUMAN1.215e-3750.68Troponin C, skeletal muscle OS=Homo sapiens GN=TNN... [more]
TNNC1_PIG1.587e-3751.35Troponin C, slow skeletal and cardiac muscles OS=S... [more]
TNNC1_MOUSE1.587e-3751.35Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_BOVIN1.587e-3751.35Troponin C, slow skeletal and cardiac muscles OS=B... [more]
TNNC1_RABIT2.072e-3751.35Troponin C, slow skeletal and cardiac muscles OS=O... [more]
TNNC1_HUMAN2.072e-3751.35Troponin C, slow skeletal and cardiac muscles OS=H... [more]

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Properties
Property NameValue
Genbank descriptionC01005G01SK Veg1 Citrus clementina cDNA clone C01005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287190 ID=CX287190; Name=CX287190; organism=Citrus clementina; type=EST; length=652bp
GGCACGAGGGATCAGCTCACGGACGATCAGATCTCTGAGTTCAAAGAGGC
CTTCAGCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAGGAGC
TTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTC
CAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTATTGATTT
TCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTG
AGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGT
TTCATCTCAGCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAGAGAA
ACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTTGATG
GTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGCCAAG
TAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACTAAATTATAA
AGGGATTCCTAGTTTTCTCTTTTACAATTTTTAATTTGATAGTCATGAGG
GTCAGGCTAAAGGAAGCAATGGTCTTTTAATGGTGATGGGCCTGATGGTG
TAGGAAGAATGTTGTCTCCCTCGTCAATATGTCTTGTGACTCGCAAAACT
TT
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