CX287190

Overview
NameCX287190
Unique NameCX287190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: CML20_ARATH (Probable calcium-binding protein CML20 OS=Arabidopsis thaliana GN=CML20 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.044e-33
Identity = 67/142 (47.18%), Postives = 97/142 (68.31%), Query Frame = 1
Query:   16 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            LT  +  E KEAF LFD DG G I  KEL   MR+LG   TE ++  MI +VD DG+G IDF EF+++M  K+ + D++EEL +AF++ D D+NG IS  +++ +  +LGE  TD E+ EM+ EAD D DG++N +EF+++M
Sbjct:   20 LTTQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAIDFDEFVHMMTAKIGERDTKEELTKAFQIIDLDKNGKISPDDIKRMAKDLGENFTDAEIREMVEEADRDRDGEVNMDEFMRMM 161          

HSP 2 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  241 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 450
            T  ++E+KEAF +FD D +G I A EL   M  LG ++T+E++++MI + D DG G I+++EFV +M AK
Sbjct:   22 TQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAIDFDEFVHMMTAK 91          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: CML13_ORYSJ (Probable calcium-binding protein CML13 OS=Oryza sativa subsp. japonica GN=CML13 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.177e-32
Identity = 65/142 (45.77%), Postives = 98/142 (69.01%), Query Frame = 1
Query:   16 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            LT  +  E KEAF LFD D  G I  KEL   MR+LG   TE ++  MI +VD DG+G+ID+ EF ++M  K+ + DS+EEL +AF + D+D+NG IS  +++ +   LGE  T +E+ EM++EAD +GDG+I+++EF+++M
Sbjct:   21 LTKQKRQEIKEAFDLFDTDNSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGSIDYEEFEHMMTAKIGERDSKEELTKAFSIIDQDKNGKISDVDIQRIAKELGENFTYQEIQEMVQEADRNGDGEIDFDEFIRMM 162          

HSP 2 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  253 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 450
            +E+KEAF +FD D +G I A EL   M  LG ++T+E++++MI + D DG G I+YEEF  +M AK
Sbjct:   27 QEIKEAFDLFDTDNSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGSIDYEEFEHMMTAK 92          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC_TACTR (Troponin C OS=Tachypleus tridentatus PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.537e-32
Identity = 64/150 (42.67%), Postives = 106/150 (70.67%), Query Frame = 1
Query:    1 GTRDQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            G  + L+ +Q+   ++AF +FD+D  G I T  + T++R+LGQ   E +L+D+I E+D DG+G ++F EF+ L AR + + D+E   EEL+EAFR++DK   GFI+ ++LR ++  L +KLT++E+DEMI E D DG G ++++EF+++M
Sbjct:    2 GAAEDLSKEQVQMLRKAFDMFDRDKKGVIHTNMVSTILRTLGQTFEEKDLKDLIAEIDQDGSGELEFEEFMALAARFLVEEDAEAMQEELREAFRLYDKQGQGFINVSDLRDILRALDDKLTEDELDEMIAEIDTDGSGTVDFDEFMEMM 151          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC_BRALA (Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 72/149 (48.32%), Postives = 105/149 (70.47%), Query Frame = 1
Query:    7 RDQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            R    ++QISEFK AF +FD+DG G I+TKELGT+M+ LG + +  ELQ MI+EVD D +GTIDF EFL +MAR M+D++ E   +EL+ AFRV DK+ +GFI   E R + +   G+ LTD+E+ E + + D + DG+ +YEE+ +++
Sbjct:    8 RVMFKEEQISEFKMAFDMFDEDGGGDISTKELGTIMKRLGMSISREELQQMIDEVDEDASGTIDFEEFLEMMARAMQDSEREIPDDELRAAFRVLDKNGDGFIDKDEFRALASECAGDDLTDDELLEFMMDYDGNRDGRFDYEEWKEII 156          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: CML11_ORYSJ (Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica GN=CML11 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 67/149 (44.97%), Postives = 101/149 (67.79%), Query Frame = 1
Query:   10 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKM---KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 447
            + L DDQ+ E +E F  FD++GDG +T  ELG+++RSLG  P+  EL  +I   D + NG I+F EF+ L+A ++   +   SE++++  F +FD+D NGFI+AAEL H M  LG  LT +E+  MI+EAD DGDG+I+++EF + + A
Sbjct:   55 EPLGDDQLGELREIFRSFDRNGDGSLTQLELGSLLRSLGLKPSTDELDSLIQRADTNSNGLIEFSEFVALVAPELLYDRAPYSEDQIRRLFNIFDRDGNGFITAAELAHSMAKLGHALTVKELTGMIKEADTDGDGRISFQEFSRAITA 203          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: CALL5_HUMAN (Calmodulin-like protein 5 OS=Homo sapiens GN=CALML5 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31
Identity = 68/143 (47.55%), Postives = 102/143 (71.33%), Query Frame = 1
Query:   13 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            +LT ++ +++K+AFS  D DG+G I  +ELG  +++ G+N +EA+L+ +I+EVD+DG+G I F EFL   A+K +     E+L+ AFR FD+D +G I+  ELR  M  LG+ L  EE+D MIREADVD DG++NYEEF +++
Sbjct:    4 ELTPEEEAQYKKAFSAVDTDGNGTINAQELGAALKATGKNLSEAQLRKLISEVDSDGDGEISFQEFLTA-AKKARA--GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 143          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC2_CAEEL (Troponin C, isoform 2 OS=Caenorhabditis elegans GN=tnc-2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31
Identity = 61/148 (41.22%), Postives = 104/148 (70.27%), Query Frame = 1
Query:   10 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL----NLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            ++L+ DQI +F++ F++FDK+G G I   ++G ++R++GQ   E +L+ +I E DADG+G I+F EF     N +     D   EEEL+EAFR++DK+ NG+I+ ++LR ++  L + +++EE+DEMI E D DG G ++++EF+++M
Sbjct:   10 EKLSADQIEQFRKYFNMFDKEGKGYIRATQVGQILRTMGQAFEERDLKQLIKEFDADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMM 157          

HSP 2 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 31/63 (49.21%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   37 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 225
            E +EAF L+DK+G+G I   +L  ++R+L  N +E EL +MI E+DADG+GT+DF EF+ +M+
Sbjct:   96 ELREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMMS 158          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: TNNC_HALRO (Troponin C, body wall muscle OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.438e-30
Identity = 73/152 (48.03%), Postives = 101/152 (66.45%), Query Frame = 1
Query:   10 DQLTDDQISEFKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD-------SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            + LT+D+ S+F+ AF +F  D  DG I++KELG VM+ LGQNPTE +LQ+MI EVD DG+GTIDF EF  +M R+M+  +        E+EL EAFR+FD D +G     EL+  +   GE +   EVDEM+ + D + D QI+YEE+V +M
Sbjct:    2 EHLTEDEKSQFRAAFDIFVADAKDGTISSKELGKVMKMLGQNPTEKDLQEMIEEVDIDGSGTIDFEEFCLMMYRQMQAQEEAKIPEREEKELSEAFRLFDLDGDGI--GDELKAALDGTGENVETWEVDEMMADGDKNHDSQIDYEEWVTMM 151          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: CML17_ARATH (Probable calcium-binding protein CML17 OS=Arabidopsis thaliana GN=CML17 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.204e-30
Identity = 66/149 (44.30%), Postives = 101/149 (67.79%), Query Frame = 1
Query:   13 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKM----KDTD--SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 441
            +L ++QI+E +E F  FD++ DG +T  ELG+++R+LG  P+  + + +I++ D   NG ++FPEF+ L++ ++    K T   +EE+L   FR+FD D NGFI+AAEL H M  LG  LT  E+  MI+EAD DGDG+IN++EF K +
Sbjct:    8 KLDEEQINELREIFRSFDRNKDGSLTQLELGSLLRALGVKPSPDQFETLIDKADTKSNGLVEFPEFVALVSPELLSPAKRTTPYTEEQLLRLFRIFDTDGNGFITAAELAHSMAKLGHALTVAELTGMIKEADSDGDGRINFQEFAKAI 156          
BLAST of CX287190 vs. ExPASy Swiss-Prot
Match: CML9_ORYSJ (Probable calcium-binding protein CML9 OS=Oryza sativa subsp. japonica GN=CML9 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.185e-30
Identity = 69/149 (46.31%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   13 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG-----TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 444
            +LT +Q+ E +E F LFD D DG I   EL T +RSLGQN  EAE +  + +  A G G      IDF  FL++ ARKM+   +E+EL     VFD  ++G I A +LR  M + G++LT+EE DEM+R+AD  G+G++ Y+EFVKV+M
Sbjct:    4 KLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASGGGGGGGGDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152          
The following BLAST results are available for this feature:
BLAST of CX287190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 484
Match NameE-valueIdentityDescription
CML20_ARATH4.044e-3347.18Probable calcium-binding protein CML20 OS=Arabidop... [more]
CML13_ORYSJ1.177e-3245.77Probable calcium-binding protein CML13 OS=Oryza sa... [more]
TNNC_TACTR1.537e-3242.67Troponin C OS=Tachypleus tridentatus PE=1 SV=1[more]
TNNC_BRALA2.621e-3248.32Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1[more]
CML11_ORYSJ3.424e-3244.97Probable calcium-binding protein CML11 OS=Oryza sa... [more]
CALL5_HUMAN1.699e-3147.55Calmodulin-like protein 5 OS=Homo sapiens GN=CALML... [more]
TNNC2_CAEEL2.898e-3141.22Troponin C, isoform 2 OS=Caenorhabditis elegans GN... [more]
TNNC_HALRO1.438e-3048.03Troponin C, body wall muscle OS=Halocynthia roretz... [more]
CML17_ARATH3.204e-3044.30Probable calcium-binding protein CML17 OS=Arabidop... [more]
CML9_ORYSJ4.185e-3046.31Probable calcium-binding protein CML9 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC01005G01SK Veg1 Citrus clementina cDNA clone C01005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287190 ID=CX287190; Name=CX287190; organism=Citrus clementina; type=EST; length=652bp
GGCACGAGGGATCAGCTCACGGACGATCAGATCTCTGAGTTCAAAGAGGC
CTTCAGCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAGGAGC
TTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTC
CAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTATTGATTT
TCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTG
AGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGT
TTCATCTCAGCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAGAGAA
ACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTTGATG
GTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGCCAAG
TAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACTAAATTATAA
AGGGATTCCTAGTTTTCTCTTTTACAATTTTTAATTTGATAGTCATGAGG
GTCAGGCTAAAGGAAGCAATGGTCTTTTAATGGTGATGGGCCTGATGGTG
TAGGAAGAATGTTGTCTCCCTCGTCAATATGTCTTGTGACTCGCAAAACT
TT
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