CX287193

Overview
NameCX287193
Unique NameCX287193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 49/141 (34.75%), Postives = 71/141 (50.35%), Query Frame = 1
Query:  226 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 594
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L+Y  +           ++  +++ +G+ EG R      P     DP++P
Sbjct:   52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLGEGLDPLYP 190          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.653e-14
Identity = 49/142 (34.51%), Postives = 69/142 (48.59%), Query Frame = 1
Query:  226 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLF--------IVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 594
            PNR  W   +  +  P +L G  PGD+G+D  GL +DPET +   + E++H RWAMLGA G   PELL K G       W+ AG        L+Y  + + +          V++I +G  EG R      P     DP++P
Sbjct:   39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNG--GPAGEGLDPLYP 178          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  262 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 594
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DP++P
Sbjct:   69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVVDPLYP 193          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  262 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 594
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +        +++  ++I +G  EG R A    P     DP++P
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG--GPLGEIVDPLYP 189          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  262 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 594
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DP++P
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVVDPLYP 194          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  262 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 594
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DP++P
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVVDPLYP 153          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.476e-13
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  262 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 594
            P +L G  PGD+G+D   L +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVVDPLYP 192          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.476e-13
Identity = 43/127 (33.86%), Postives = 62/127 (48.82%), Query Frame = 1
Query:  262 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 594
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL+K G+      W+ AG                L +      ++  +++ +G  EG R      P     DP++P
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGG--GPLGEGLDPLYP 189          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  226 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 465
            P+RP +        P +L G  PGD+G+D   + +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAG 135          
BLAST of CX287193 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 1
Query:  262 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 594
            P +L G  P D+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + GI      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVIDPLYP 192          
The following BLAST results are available for this feature:
BLAST of CX287193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB215_PEA6.625e-1434.75Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_CHLRE8.653e-1434.51Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB28_PEA1.130e-1335.43Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_APIGR1.130e-1335.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PEA1.130e-1335.43Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_PEA1.130e-1335.43Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB25_PETSP1.476e-1334.65Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_LEMGI1.476e-1333.86Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PINTH2.518e-1343.37Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_PETSP3.288e-1334.65Chlorophyll a-b binding protein 22R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionC01005G04SK Veg1 Citrus clementina cDNA clone C01005G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287193 ID=CX287193; Name=CX287193; organism=Citrus clementina; type=EST; length=628bp
GAATTCGGCACGAGGTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGC
TTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTC
AGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGG
AAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGT
TTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAG
GCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGC
TTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGT
GCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAA
TTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCC
TGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTT
CATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCG
ACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAAC
AAGCTCACCGGCACCGATGTTGGGTACC
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