CX287196

Overview
NameCX287196
Unique NameCX287196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:384..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 2
Query:  191 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLY 604
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIF 184          
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  464 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLY 604
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LY
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLY 48          
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15
Identity = 55/154 (35.71%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  152 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLY 604
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIF 184          
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2
Query:  485 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 604
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 191          
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2
Query:  485 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 604
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 191          
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2
Query:  485 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 604
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 40          
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2
Query:  485 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 604
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 189          
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2
Query:  485 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 604
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 189          
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.624e-14
Identity = 55/150 (36.67%), Postives = 71/150 (47.33%), Query Frame = 2
Query:   41 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 484
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132          
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  221 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 448
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          

HSP 2 Score: 72.0182 bits (175), Expect = 2.593e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  230 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 433
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440          
The following BLAST results are available for this feature:
BLAST of CX287196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB12_SOLLC1.125e-1536.88Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB21_RAPSA1.919e-1583.33Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_PETHY1.919e-1535.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2F_SOLLC2.506e-1595.00Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.506e-1595.00Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.506e-1595.00Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.506e-1595.00Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.506e-1595.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB121_HORVU1.624e-1436.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
LH18_EUGGR5.226e-1346.05Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC01005G07SK Veg1 Citrus clementina cDNA clone C01005G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287196 ID=CX287196; Name=CX287196; organism=Citrus clementina; type=EST; length=604bp
TCGAACACTAGAGCTCACCAACAACTCTGATCATTGTAAAATGGCAACCT
CGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCC
CCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAAC
CGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAG
TCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGT
GAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCC
AGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGG
CCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAAC
GGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTT
CAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTC
AGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTT
GAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATT
GTAC
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