CX287196
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 2 Query: 191 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLY 604 PDR + F G PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q +Y + + ++ ++VL+G EG R A P TDP++ Sbjct: 63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIF 184
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15 Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 2 Query: 464 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLY 604 LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LY Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLY 48
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15 Identity = 55/154 (35.71%), Postives = 79/154 (51.30%), Query Frame = 2 Query: 152 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLY 604 GS+SV+ + PDR + F G PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q +Y + + ++ ++VL+G EG R A P TDP++ Sbjct: 50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIF 184
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15 Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 Query: 485 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 604 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 191
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15 Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 Query: 485 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 604 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 191
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15 Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 Query: 485 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 604 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 40
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15 Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 Query: 485 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 604 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 189
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15 Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 Query: 485 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 604 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 189
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.624e-14 Identity = 55/150 (36.67%), Postives = 71/150 (47.33%), Query Frame = 2 Query: 41 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 484 MA+S+ S S VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP Sbjct: 1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132
BLAST of CX287196 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2 Query: 221 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 448 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261 HSP 2 Score: 72.0182 bits (175), Expect = 2.593e-12 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 2 Query: 230 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 433 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF+ Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440 The following BLAST results are available for this feature:
BLAST of CX287196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287196 ID=CX287196; Name=CX287196; organism=Citrus clementina; type=EST; length=604bpback to top |