CX287199

Overview
NameCX287199
Unique NameCX287199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 2.838e-84
Identity = 150/212 (70.75%), Postives = 178/212 (83.96%), Query Frame = 3
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQV + LGKHL +Q MVTTGGTSL+DDI+RL  PVH+LVGTPGR+LDL+ + V  L +C + VMDEADK+LS EF+  +EQ++ F P  RQ L+FSATFP+ VK F D++L KPY INLMDELTL+GI+Q+YAFVEE+QK+HCLNTLFSKLQINQ+IIFCNS NRVELLAKKITELGYSC+Y HAKM Q  RN+VFH+FR G  R
Sbjct:  108 RELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAFFPTTRQSLLFSATFPLAVKSFMDQHLTKPYEINLMDELTLRGISQFYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVR 319          
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 3.707e-84
Identity = 149/212 (70.28%), Postives = 178/212 (83.96%), Query Frame = 3
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQV + LGKH  I  MVTTGGT+L+DDI+RL + VH+LVGTPGR+LDL+ + V  L DCS+ +MDEADK+LS +F+  +EQ++ FLP   Q L+FSATFP+TVK+F  K+L KPY INLM+ELTLKGITQYYAFVEERQK+HCLNTLFSKLQINQ+IIFCNS NRVELLAKKIT+LGYSC+Y HA+M Q  RN+VFH+FR G  R
Sbjct:  124 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 335          
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 3.707e-84
Identity = 149/212 (70.28%), Postives = 178/212 (83.96%), Query Frame = 3
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQV + LGKH  I  MVTTGGT+L+DDI+RL + VH+LVGTPGR+LDL+ + V  L DCS+ +MDEADK+LS +F+  +EQ++ FLP   Q L+FSATFP+TVK+F  K+L KPY INLM+ELTLKGITQYYAFVEERQK+HCLNTLFSKLQINQ+IIFCNS NRVELLAKKIT+LGYSC+Y HA+M Q  RN+VFH+FR G  R
Sbjct:  124 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 335          
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.138e-83
Identity = 147/212 (69.34%), Postives = 178/212 (83.96%), Query Frame = 3
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQV + LGKH  I  MVTTGGT+L+DDI+RL + VH+LVGTPGR+LDL+ + V  L +C++ +MDEADK+LS +F+  +EQ++ FLP N Q L+FSATFP++VK+F   +L KPY INLMDELTLKGITQYYAFVEE+QK+HCLNTLFSKLQINQ+IIFCNS NRVELLAKKIT+LGYSC+Y HA+M Q  RNRVFH+FR G  R
Sbjct:  112 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSECNLFIMDEADKMLSRDFKSIIEQILVFLPKNHQSLLFSATFPLSVKEFMVNHLHKPYEINLMDELTLKGITQYYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVR 323          
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.138e-83
Identity = 148/212 (69.81%), Postives = 178/212 (83.96%), Query Frame = 3
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQV + LG+H  +  MVTTGGT+L+DDI+RL + VH+LVGTPGR+LDL+ + V  L +CS+ VMDEADK+LS +F+  +EQ++ FLP   Q L+FSATFP+TVK+F  K+L KPY INLM+ELTLKGITQYYAFVEERQK+HCLNTLFSKLQINQ+IIFCNS NRVELLAKKIT+LGYSC+Y HA+M Q  RN+VFHDFR G  R
Sbjct:  109 RELALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDILRLNETVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQVLTFLPKAHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQDRNKVFHDFRQGKVR 320          
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.099e-83
Identity = 147/212 (69.34%), Postives = 179/212 (84.43%), Query Frame = 3
Query:    6 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQTSQV + LGKH  I  MVTTGGT+L+DDIMRL +PVH+LVGTPGR+LDL+ + V  L +C + +MDEADK+LS +F+   EQ++ FLP  RQ+L+FSATFPVTVK+F  K+L+ P+ INLMDELTLKGI+Q+YAFVEE+QK+HCLNTLFSKLQINQ+IIFCNS NRVELLAKKITELG+SC+Y HA+M Q  RN+VFH+FR G  R
Sbjct:  114 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHILVGTPGRVLDLASRRVTDLSECHLFIMDEADKMLSRDFKVLAEQILGFLPERRQLLLFSATFPVTVKEFMVKHLKNPHEINLMDELTLKGISQFYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVR 325          
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 3.470e-82
Identity = 148/213 (69.48%), Postives = 179/213 (84.04%), Query Frame = 3
Query:    6 RELALQTSQVCKELGKHLN-IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQ SQ+C ++ KH+   +VM TTGGT+L+DDIMRL   VH+++ TPGRILDL KKGV  ++   M+V+DEADKLLS +F   +E +I  LP NRQIL++SATFP++V+ F + +LQKPY INLM+ELTLKG+TQYYA+V ERQKVHCLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CR
Sbjct:  174 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCR 386          
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 4.532e-82
Identity = 148/213 (69.48%), Postives = 178/213 (83.57%), Query Frame = 3
Query:    6 RELALQTSQVCKELGKHLN-IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQ SQ+C ++ KH+  ++VM TTGGT+L+DDIMRL   VH+++ TPGRILDL KKGV  +    M+V+DEADKLLS +F   +E +I  LP NRQIL++SATFP++V+ F   +LQKPY INLM+ELTLKG+TQYYA+V ERQKVHCLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CR
Sbjct:  173 RELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFVQIMEDIIITLPKNRQILLYSATFPLSVQKFMTSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCR 385          
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DDX6_MOUSE (Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 5.919e-82
Identity = 148/213 (69.48%), Postives = 178/213 (83.57%), Query Frame = 3
Query:    6 RELALQTSQVCKELGKHLN-IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQ SQ+C ++ KH+   +VM TTGGT+L+DDIMRL   VH+++ TPGRILDL KKGV  +    M+V+DEADKLLS +F   +E +I  LP NRQIL++SATFP++V+ F + +LQKPY INLM+ELTLKG+TQYYA+V ERQKVHCLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CR
Sbjct:  174 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCR 386          
BLAST of CX287199 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 5.919e-82
Identity = 148/213 (69.48%), Postives = 178/213 (83.57%), Query Frame = 3
Query:    6 RELALQTSQVCKELGKHLN-IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 641
            RELALQ SQ+C ++ KH+   +VM TTGGT+L+DDIMRL   VH+++ TPGRILDL KKGV  +    M+V+DEADKLLS +F   +E +I  LP NRQIL++SATFP++V+ F + +LQKPY INLM+ELTLKG+TQYYA+V ERQKVHCLNTLFS+LQINQSIIFCNS  RVELLAKKI++LGYSCFYIHAKM Q+HRNRVFHDFRNG CR
Sbjct:  174 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCR 386          
The following BLAST results are available for this feature:
BLAST of CX287199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_DEBHA2.838e-8470.75ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
DHH1_YEAST3.707e-8470.28ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS73.707e-8470.28ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_VANPO3.138e-8369.34ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DHH1_CANGA3.138e-8369.81ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
DHH1_KLULA4.099e-8369.34ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
DDX6_CHICK3.470e-8269.48Probable ATP-dependent RNA helicase DDX6 OS=Gallus... [more]
DDX6_XENTR4.532e-8269.48Probable ATP-dependent RNA helicase ddx6 OS=Xenopu... [more]
DDX6_MOUSE5.919e-8269.48Probable ATP-dependent RNA helicase DDX6 OS=Mus mu... [more]
DDX6_HUMAN5.919e-8269.48Probable ATP-dependent RNA helicase DDX6 OS=Homo s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005G11SK Veg1 Citrus clementina cDNA clone C01005G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287199 ID=CX287199; Name=CX287199; organism=Citrus clementina; type=EST; length=643bp
CGAGGAGAGAGTTGGCTCTTCAGACATCCCAAGTCTGTAAGGAGCTGGGG
AAGCATTTGAATATTCAAGTCATGGTTACCACTGGTGGAACCAGTCTTAA
GGATGATATTATGCGTTTGTATCAACCTGTTCATTTGCTTGTTGGAACTC
CTGGAAGAATACTAGATCTTTCTAAGAAGGGTGTTTGCATTTTGAAAGAT
TGTTCAATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCACCAGAGTT
CCAACCTTCAGTAGAGCAGCTTATTCGTTTTCTTCCTGCAAATCGTCAAA
TTTTAATGTTTTCAGCTACTTTCCCTGTTACCGTCAAGGACTTTAAAGAT
AAATACCTACAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCT
CAAGGGAATTACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCC
ACTGCCTCAACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATT
TTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGA
ACTTGGGTACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATC
GCAACAGAGTATTTCATGACTTCCGCAATGGTGCATGCAGGAA
back to top