CX287206

Overview
NameCX287206
Unique NameCX287206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig39 contig Ccv1_Contig39:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 76/213 (35.68%), Postives = 114/213 (53.52%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSD--DATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLE 664
            +  E++   ++ H  LVPLLG C   E E+LLVY+YM  G L   LH   D +   ++ L+W  R KIAIGAA GL++LHH C P ++HRD+++S++LLD+  E R+    ++ L +  D+H +V T              S   +   DVY +G VLLEL+TGK     +D  D     W       + LH K  +T + D  L+ ++  +E
Sbjct:  929 FTAEMETIGKIKHRNLVPLLGYCKVGE-ERLLVYEYMKYGSLEDVLH---DRKKIGIK-LNWPARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKQPTDSADFGDNNLVGW-------VKLHAKGKITDVFDRELLKEDASIE 1129          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25
Identity = 69/206 (33.50%), Postives = 112/206 (54.37%), Query Frame = 2
Query:   26 KKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQGDSHQNVLTRFLWRQTSDASNSG-SSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            ++++++  +   SR+ H  +VPL G C EH  ++LLVY+Y+  G+L  +LH      DD   +L W  R+K+A+G A+ L YLH  C P +VHR+ ++++ILLD++    L          ++ + V T+ +      A     S   T   DVY FG V+LEL+TG+  +  S     +  +    P   LHD + L+K++DPSL
Sbjct:  434 EEDNFLEAVSNMSRLRHPNIVPLAGYCTEHG-QRLLVYEYVGNGNLDDTLHT----NDDRSMNLTWNARVKVALGTAKALEYLHEVCLPSIVHRNFKSANILLDEELNPHLSDSGLAALTPNTERQVSTQVVGSFGYSAPEFALSGIYTVKSDVYTFGVVMLELLTGRKPLDSSRTRAEQSLVRWATPQ--LHDIDALSKMVDPSL 632          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 84/228 (36.84%), Postives = 121/228 (53.07%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTR-FLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTG----KLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            +  EL++ S   H  L+ L+G C    +E+LLVY YM  G +AS L         +  +LDW TR KIAIGAA GL YLH +C+P ++HRDV+A++ILLD+ FE  +G   L++L    DSH     R  +     +  ++G S+     DV+ FG +LLEL+TG    + G S S      EW+        LH +  + +++D  L    D + EV  M  VA  C
Sbjct:  341 FRTELEMISLAVHRNLLRLIGYCAS-SSERLLVYPYMSNGSVASRLK--------AKPALDWNTRKKIAIGAARGLFYLHEQCDPKIIHRDVKAANILLDEYFEAVVGDFGLAKLLNHEDSHVTTAVRGTVGHIAPEYLSTGQSSEKT--DVFGFGILLLELITGMRALEFGKSVSQKGAMLEWVR------KLHKEMKVEELVDRELGTTYDRI-EVGEMLQVALLC 550          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 78/227 (34.36%), Postives = 125/227 (55.07%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTR-FLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLG-----ISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL--ILDEDLLEEVWAMAIV 688
            +  E+++ S   H  L+ L G C+   TE+LLVY YM  G +AS L         S   LDW TR +IA+G+A GLSYLH  C+P ++HRDV+A++ILLD++FE  +G   L++L    D+H     R  +     +  ++G S+     DV+ +G +LLEL+TG+       ++  DD    +W++  L       ++ L  ++DP L    +E  LE+V  +A++
Sbjct:  344 FQTEVEMISMAVHRNLLRLRGFCMT-PTERLLVYPYMANGSVASCLRE----RPPSQPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKT--DVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLL------KEKKLEMLVDPDLQTNYEERELEQVIQVALL 557          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 68/193 (35.23%), Postives = 106/193 (54.92%), Query Frame = 2
Query:   68 VSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            + H+ +V L+G C EH+ ++LLVY+Y   G L   LH     +D+  + L W TR+ +A+GAA  L YLH  C PP++HR+ +++++LLDD   V +    L+ L + G   Q +  + L      A    S   T   DVY FG V+LEL+TG++   +      +  +   +P   LHD + L K++DPSL
Sbjct:  538 IRHSNIVELVGYCAEHD-QRLLVYEYCSNGTLQDGLHS----DDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQ-LSGQLLAAYGYGAPEFDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQ--LHDIDALGKMVDPSL 722          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 74/225 (32.89%), Postives = 108/225 (48.00%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            + + +E +L   V H  L   +G C +      L+Y+YM  G+L   L        ++ + L W  RL IAI +A+GL YLHH C PP+VHRDV+ ++ILL+D  E ++    LS++  + D    V          D     +       DVY FG VLLEL+TGK  I K+DD      + +  P + + D   +  ++DP L  D       W    VA SC
Sbjct:  619 KEFQVEAELLLTVHHRNLASFVGYC-DDGRSMALIYEYMANGNLQDYL------SSENAEDLSWEKRLHIAIDSAQGLEYLHHGCRPPIVHRDVKTANILLNDNLEAKIADFGLSKVFPEDDLSHVVTAVMGTPGYVDPEYYNTFKLNEKSDVYSFGIVLLELITGKRSIMKTDDGEKMNVVHYVEPFLKMGD---IDGVVDPRLHGDFS-SNSAWKFVEVAMSC 832          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 73/169 (43.20%), Postives = 94/169 (55.62%), Query Frame = 2
Query:   29 KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNV-LTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGK 526
            +  +  E++  SR  H  LV L G C +H  ++LL+Y +M  G L   LH   D       +L W  RLKIA GAA GL+YLH  C P ++HRDV++S+ILLD+KFE  L    L+ L    D+H    L   L     + S   S  ATC  DVY FG VLLELVTG+
Sbjct:  792 EREFQAEVEALSRAEHKNLVSLQGYC-KHGNDRLLIYSFMENGSLDYWLHERVD----GNMTLIWDVRLKIAQGAARGLAYLHKVCEPNVIHRDVKSSNILLDEKFEAHLADFGLARLLRPYDTHVTTDLVGTLGYIPPEYSQ--SLIATCRGDVYSFGVVLLELVTGR 953          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 72/183 (39.34%), Postives = 104/183 (56.83%), Query Frame = 2
Query:    2 KKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTRFLWRQTSDASNSGSS--AATCAYDVYCFGKVLLELVTGKLGIS 538
            K++S   F ++ +  E++    + H  LVPLLG C+  E E+LLVYK+MV G L S LH     +      LDW TR  I +GAA+GL++LHH C PP +H+ + ++ ILLDD F+ R+    L++L    DS+ +        +    +   SS   A+   DVY FG VLLELVTG+  +S
Sbjct:  329 KRLSACGFGEKQFRSEMNKLGELRHPNLVPLLGYCVV-EDERLLVYKHMVNGTLFSQLHNGGLCD----AVLDWPTRRAIGVGAAKGLAWLHHGCQPPYLHQFISSNVILLDDDFDARITDYGLAKLVGSRDSNDSSFNNGDLGELGYVAPEYSSTMVASLKGDVYGFGIVLLELVTGQKPLS 506          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 74/225 (32.89%), Postives = 114/225 (50.67%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCL-EHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL---SELHAQGDSHQNVLTRFLWRQTSDASN-SGSSAATCAYDVYCFGKVLLELVTGKLGISK--SDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAI 685
            +S+  E+    R+ H  LV L+G C  + E   LL+Y+YM  G +   LH    + +   + LDW  RL+IA+G A+G+ YLHH+C PP+VHRD+++S++LLD   E  LG       L    D++ +  T F       A   + S  AT   DVY  G VL+E+VTGK+        +     W+E  L        +++   + P L  +ED   +V  +A+
Sbjct:  991 KSFSREVKTLGRIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSIWDWLHEDKPVLEKKKKLLDWEARLRIAVGLAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGDFGLAKVLTENCDTNTDSNTWFACSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMPTDSVFGAEMDMVRWVETHLEVAGSARDKLIDPKLKPLLPFEEDAACQVLEIAL 1215          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 67/203 (33.00%), Postives = 106/203 (52.22%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            E +   +   S + H  +  L+G C E +   +LVY+Y   G    SLHR   L DD  + L W TR++IA+G A+ + YLH  C+PPLVH+++++S+ILLD++   RL      +    + QN+   +   + +D      SA T   DVY FG V+LEL+TG+           +  +    P   L D + L +++DP+L
Sbjct:  456 EEFSHIVSSISSIHHKNMAELVGYCSE-QGRNMLVYEYFTSG----SLHRFLHLSDDFSKPLTWNTRIRIALGTAKAIEYLHETCSPPLVHKNIKSSNILLDNELNPRLSDYGLANFHHRTSQNLGVGYNAPECTD-----PSAYTQKSDVYSFGVVMLELLTGRKPYDSGRPKAEQSLVRWAKPQ--LKDMDTLDEMVDPAL 646          
The following BLAST results are available for this feature:
BLAST of CX287206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
BRI1_SOLLC1.214e-2535.68Brassinosteroid LRR receptor kinase OS=Solanum lyc... [more]
SRF8_ARATH1.586e-2533.50Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
Y2239_ARATH3.532e-2536.84Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH4.613e-2534.36Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
SRF3_ARATH6.025e-2535.23Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
Y4291_ARATH1.342e-2432.89Probable LRR receptor-like serine/threonine-protei... [more]
PSKR2_ARATH1.753e-2443.20Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]
Y1719_ARATH2.290e-2439.34Probable inactive receptor kinase At1g27190 OS=Ara... [more]
GSO1_ARATH3.905e-2432.89LRR receptor-like serine/threonine-protein kinase ... [more]
SRF4_ARATH6.662e-2433.00Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005H06SK Veg1 Citrus clementina cDNA clone C01005H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287206 ID=CX287206; Name=CX287206; organism=Citrus clementina; type=EST; length=700bp
AAAAAAGGTCAGTCTGCATTCGTTCAAGAAAGAATCATACATGATGGAAT
TAGATTTGTTCAGCAGAGTTTCACATGCAAGACTGGTGCCACTTTTAGGC
CAATGCTTGGAGCATGAGACAGAGAAACTTTTGGTCTACAAATATATGGT
ATGTGGAGATTTGGCTAGTTCCTTGCACAGGGTTACAGATTTGGAGGATG
ACAGTTTACAATCCCTAGATTGGATTACAAGATTGAAAATTGCAATTGGT
GCGGCGGAAGGTTTATCCTACCTACATCATGAGTGTAACCCTCCTCTTGT
TCACAGAGATGTTCAAGCCAGCAGTATCCTTCTCGATGATAAATTTGAAG
TTCGACTTGGAAGCTTGAGTGAGCTTCATGCTCAAGGAGATTCACACCAA
AATGTGCTAACGAGATTTTTGTGGAGACAAACCTCTGATGCAAGCAATTC
AGGCTCCTCCGCGGCAACTTGTGCCTATGATGTGTACTGCTTTGGAAAAG
TCCTACTTGAGCTTGTAACTGGCAAGCTTGGTATTAGCAAATCAGATGAT
GCTACTACACGAGAGTGGTTGGAACATACACTACCTCACATCACTTTACA
CGACAAGGAAATGTTGACCAAGATCATCGACCCATCTCTGATTCTAGATG
AGGATCTACTGGAAGAAGTATGGGCCATGGCAATTGTAGCCAGATCATGC
back to top