CX287206

Overview
NameCX287206
Unique NameCX287206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig39 contig Ccv1_Contig39:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 76/232 (32.76%), Postives = 107/232 (46.12%), Query Frame = 2
Query:   29 KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAY--------DVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            K  ++ E+   S V H  LV L G C E E  ++LVY+Y+  G L  +L        D    LDW TR +I +G A GL YLH E +  +VHRDV+AS+ILLD +   ++          D   ++ TR        A   G  A   A         DVY FG V LELV+G+    ++ +   +  LE       LH+K    ++ID    L +  +EE   M  +A  C
Sbjct:  732 KGQFVAEIVAISSVLHRNLVKLYGCCFEGE-HRMLVYEYLPNGSLDQALF------GDKTLHLDWSTRYEICLGVARGLVYLHEEASVRIVHRDVKASNILLDSRLVPQISDFGLAKLYDDKKTHISTRV-------AGTIGYLAPEYAMRGHLTEKTDVYAFGVVALELVSGRPNSDENLEEEKKYLLEWAW---NLHEKSRDIELIDDK--LTDFNMEEAKRMIGIALLC 944          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 72/211 (34.12%), Postives = 110/211 (52.13%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTRFLWRQ-TSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDED 655
            + +  E++L  RV H  LV L+G C + +    L+Y+YM  GDL S L   +    D +  L W  RL IA+  A GL YLH  C P +VHRDV++ +ILLD+ F+ +L    LS   + G+   +V T  +      D     +   T   DVY FG VLLE++T +  + ++++   R   E     +T  D   ++ I+DP+LI + D
Sbjct:  612 KEFKAEVELLLRVHHINLVSLVGYC-DEQAHLALIYEYMANGDLKSHL---SGKHGDCV--LKWENRLSIAVETALGLEYLHSGCKPLMVHRDVKSMNILLDEHFQAKLADFGLSRSFSVGE-ESHVSTGVVGTPGYLDPEYYRTYRLTEKSDVYSFGIVLLEIITNQPVLEQANE--NRHIAERVRTMLTRSD---ISTIVDPNLIGEYD 810          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: HSL1_ARATH (Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 73/237 (30.80%), Postives = 112/237 (47.26%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLS-----ELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAY--------DVYCFGKVLLELVTGKLGIS-KSDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            E++  E++   ++ H  +V L   C   +  KLLVY+YM  G L   LH            L W TR KI + AAEGLSYLHH+  PP+VHRD+++++IL+D  +  R+         +L  +     +V+          A + G  A   AY        D+Y FG V+LE+VT K  +  +  +    +W+  TL      D++ +  +IDP   LD    EE+  +  V   C
Sbjct:  730 EAFEAEVETLGKIRHKNIVKLWCCCSTRDC-KLLVYEYMPNGSLGDLLH------SSKGGMLGWQTRFKIILDAAEGLSYLHHDSVPPIVHRDIKSNNILIDGDYGARVADFGVAKAVDLTGKAPKSMSVI----------AGSCGYIAPEYAYTLRVNEKSDIYSFGVVILEIVTRKRPVDPELGEKDLVKWVCSTL------DQKGIEHVIDPK--LDSCFKEEISKILNVGLLC 941          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKS 544
            +S++ E+ L S++ H  LV   G C E + + +LVY+Y+  G LA  L+           SL+W++RLK+A+ AA+GL YLH+   P ++HRDV++S+ILLD     ++    LS+   + D+              D     +   T   DVY FG VLLEL+ G+  +S S
Sbjct:  645 DSFINEVHLLSQIRHQNLVSFEGFCYEPKRQ-ILVYEYLSGGSLADHLYGPRSKR----HSLNWVSRLKVAVDAAKGLDYLHNGSEPRIIHRDVKSSNILLDKDMNAKVSDFGLSKQFTKADASHITTVVKGTAGYLDPEYYSTLQLTEKSDVYSFGVVLLELICGREPLSHS 812          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 78/237 (32.91%), Postives = 123/237 (51.90%), Query Frame = 2
Query:    2 KKVSLHSFK-KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGS--LSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAY-DVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            KK++   F+    ++ E++   ++SH  LV L+G CLE E  +LLVY++M  G L + L R         + L W  R+ +A+ AA+GL++LH +    +++RD++AS+ILLD  +  +L    L+     GD    V TR +      A    SS    A  DVY FG +LLE+++GK  +  +  A     ++   P++T   K +L  I+D  L   + L EE   MA VA  C
Sbjct:  105 KKLNQEGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDE-HRLLVYEFMQKGSLENHLFR----RGAYFKPLPWFLRVNVALDAAKGLAFLHSD-PVKVIYRDIKASNILLDADYNAKLSDFGLARDGPMGDLSY-VSTRVMGTYGYAAPEYMSSGHLNARSDVYSFGVLLLEILSGKRALDHNRPAKEENLVDWARPYLTSKRKVLL--IVDNRLD-TQYLPEEAVRMASVAVQC 331          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 65/206 (31.55%), Postives = 110/206 (53.40%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL-----SELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            ++ E++   ++SH  LV L+G CLE E ++LLVY++M  G L + L    + +    + L WI R+K+A+ AA+GL++LH +    +++RD++AS+ILLD  F  +L          +  Q      V+  F +      S    +A +   DVY FG VLLEL+ G+  +  +  A  +  ++   P++T   K +L  I+D  L
Sbjct:  112 WLTEINYLGQLSHPNLVKLIGYCLEDE-QRLLVYEFMHKGSLENHLFANGNKD---FKPLSWILRIKVALDAAKGLAFLHSD-PVKVIYRDIKASNILLDSDFNAKLSDFGLARDGPMGEQSYVSTRVMGTFGYAAPEYVSTGHLNARS---DVYSFGVVLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVLL--IVDTRL 307          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: WAKLO_ARATH (Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 77/233 (33.05%), Postives = 112/233 (48.07%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTR----FLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLH--DKEMLTKIIDPSLILDED--LLEEVWAMAIVARSC 700
            +  M E+ L S VSH  LV LLG C+E + + +LVY+YM  G L+  L R      D    L W  RL +A   A+ ++YLH   NPP+ HRD+++++ILLD  F  ++    LS L     SH +   +    +L  Q     +    +     DVY FG VL E++TG   +       TR   E  L  + +       + +IIDP L LD D   L  +  +A +A  C
Sbjct:  387 DQVMNEIKLLSSVSHPNLVRLLGCCIE-QGDPVLVYEYMPNGTLSEHLQR------DRGSGLPWTLRLTVATQTAKAIAYLHSSMNPPIYHRDIKSTNILLDYDFNSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQCFHLSDKS-----DVYSFGVVLAEIITGLKVVD-----FTRPHTEINLAALAVDKIGSGCIDEIIDPILDLDLDAWTLSSIHTVAELAFRC 602          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 73/242 (30.17%), Postives = 112/242 (46.28%), Query Frame = 2
Query:    2 KKVSLHSFKKESYMM--ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQGDSHQNVLTRFLWRQTS--DASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTR--EWLEHTLPHITLHDKEMLTKIIDPSL---ILDEDLLEEVWAMAIVARSC 700
            KK+     K  S  M  E++   +V H  L+ L    L  E   L++Y YM  G L   LH     E +  + LDW TR  IA+G A GL+YLH +C+P +VHRD++  +ILLD   E  +           S  ++ +  +          N+ ++  +   DVY +G VLLEL+T K  +  S +  T    W+              + KI+DPSL   ++D  ++E+V     +A  C
Sbjct:  844 KKLVFTGIKNGSVSMVREIETIGKVRHRNLIKLEEFWLRKEYG-LILYTYMENGSLHDILH-----ETNPPKPLDWSTRHNIAVGTAHGLAYLHFDCDPAIVHRDIKPMNILLDSDLEPHISDFGIAKLLDQSATSIPSNTVQGTIGYMAPENAFTTVKSRESDVYSYGVVLLELITRKKALDPSFNGETDIVGWVRSVWT-----QTGEIQKIVDPSLLDELIDSSVMEQVTEALSLALRC 1074          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 72/239 (30.13%), Postives = 121/239 (50.63%), Query Frame = 2
Query:    2 KKVSLHSFKK-ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQG-DSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDAT--TREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            KK++ +S +    ++ E++   R+ H  LV L G C + + + LL+Y Y+  G L S L+        S   L W  R KIA G A GL YLH E    ++HRD++ S++L++D    RLG   L+ L+ +G  S+  V+   +     + + +G S++  A DV+ FG +LLE+V+G+     +D  T    +W+      + LH +  +   +DP L    D +E   A+ +    C
Sbjct:  391 KKITPNSMQGVREFIAEIESLGRLRHKNLVNLQGWC-KQKNDLLLIYDYIPNGSLDSLLY---SRPRQSGVVLSWNARFKIAKGIASGLLYLHEEWEKVVIHRDIKPSNVLIEDDMNPRLGDFGLARLYERGSQSNTTVVVGTIGYMAPELARNGKSSS--ASDVFAFGVLLLEIVSGR---RPTDSGTFFLADWV------MELHARGEILHAVDPRLGFGYDGVEARLALVVGLLCC 614          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 65/205 (31.71%), Postives = 99/205 (48.29%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSA-ATCAYDVYCFGKVLLELVTGKLGIS---KSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            ++ E+ + S + H  LV L G C+E + E LLVY+Y+    LA +L       +     LDW TR KI IG A+GL+YLH E    +VHRD++A+++LLD     ++          D + ++ TR        A         T   DVY FG V LE+V+GK   +   K +     +W         L ++  L +++DP L
Sbjct:  710 FVTEIGMISALQHPNLVKLYGCCIEGK-ELLLVYEYLENNSLARALFGT----EKQRLHLDWSTRNKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLNDDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFVYLLDWA------YVLQEQGSLLELVDPDL 903          
The following BLAST results are available for this feature:
BLAST of CX287206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
Y1561_ARATH2.896e-1932.76Probable LRR receptor-like serine/threonine-protei... [more]
Y5169_ARATH3.783e-1934.12Probable LRR receptor-like serine/threonine-protei... [more]
HSL1_ARATH3.783e-1930.80Receptor-like protein kinase HSL1 OS=Arabidopsis t... [more]
Y5487_ARATH4.940e-1934.68Probable LRR receptor-like serine/threonine-protei... [more]
BIK1_ARATH4.940e-1932.91Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
Y3545_ARATH6.452e-1931.55Probable receptor-like protein kinase At3g55450 OS... [more]
WAKLO_ARATH6.452e-1933.05Wall-associated receptor kinase-like 14 OS=Arabido... [more]
RPK1_IPONI8.427e-1930.17Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
LRKA2_ARATH8.427e-1930.13Lectin-domain containing receptor kinase A4.2 OS=A... [more]
Y5343_ARATH1.101e-1831.71Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005H06SK Veg1 Citrus clementina cDNA clone C01005H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287206 ID=CX287206; Name=CX287206; organism=Citrus clementina; type=EST; length=700bp
AAAAAAGGTCAGTCTGCATTCGTTCAAGAAAGAATCATACATGATGGAAT
TAGATTTGTTCAGCAGAGTTTCACATGCAAGACTGGTGCCACTTTTAGGC
CAATGCTTGGAGCATGAGACAGAGAAACTTTTGGTCTACAAATATATGGT
ATGTGGAGATTTGGCTAGTTCCTTGCACAGGGTTACAGATTTGGAGGATG
ACAGTTTACAATCCCTAGATTGGATTACAAGATTGAAAATTGCAATTGGT
GCGGCGGAAGGTTTATCCTACCTACATCATGAGTGTAACCCTCCTCTTGT
TCACAGAGATGTTCAAGCCAGCAGTATCCTTCTCGATGATAAATTTGAAG
TTCGACTTGGAAGCTTGAGTGAGCTTCATGCTCAAGGAGATTCACACCAA
AATGTGCTAACGAGATTTTTGTGGAGACAAACCTCTGATGCAAGCAATTC
AGGCTCCTCCGCGGCAACTTGTGCCTATGATGTGTACTGCTTTGGAAAAG
TCCTACTTGAGCTTGTAACTGGCAAGCTTGGTATTAGCAAATCAGATGAT
GCTACTACACGAGAGTGGTTGGAACATACACTACCTCACATCACTTTACA
CGACAAGGAAATGTTGACCAAGATCATCGACCCATCTCTGATTCTAGATG
AGGATCTACTGGAAGAAGTATGGGCCATGGCAATTGTAGCCAGATCATGC
back to top