CX287206

Overview
NameCX287206
Unique NameCX287206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 63/205 (30.73%), Postives = 104/205 (50.73%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQG----DSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            ++ E+ + S++ H  LV L+G C E ++E +LVY+YM  G L S L+  T+        L W  RL++ IGAA GL YLH   +  ++HRD+++++ILLD+ +  ++     L   G    ++H +   +  +    D         T   DVY FG VL E++  +  +   D    RE +      I    K ML +I+DP++
Sbjct:  530 FLSEITILSKIRHRHLVSLVGYC-EEQSEMILVYEYMDKGPLKSHLYGSTN------PPLSWKQRLEVCIGAARGLHYLHTGSSQGIIHRDIKSTNILLDNNYVAKVADFG-LSRSGPCIDETHVSTGVKGSFGYL-DPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAV---DPLLVREQVNLAEWAIEWQRKGMLDQIVDPNI 722          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 67/204 (32.84%), Postives = 99/204 (48.53%), Query Frame = 2
Query:   47 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKS---DDATTREWLEHTLPHITLHDKEMLTKIIDPSLI 643
            E+ + S++ H  LV L+G C E+  E +LVY+YM  G     L+        +L  L W  RL+I IGAA GL YLH      ++HRDV++++ILLD+    ++    LS+  A G +H +   +  +    D         T   DVY FG VLLE +  +  I+     +     EW       +    K +L KIIDP L+
Sbjct:  569 EIQMLSKLRHRHLVSLIGYCDEN-AEMILVYEYMSNGPFRDHLY------GKNLSPLTWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDVAFGQNHVSTAVKGSFGYL-DPEYFRRQQLTDKSDVYSFGVVLLEALCARPAINPQLPREQVNLAEWA------MLWKQKGLLEKIIDPHLV 758          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: WAK1_ARATH (Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 69/230 (30.00%), Postives = 116/230 (50.43%), Query Frame = 2
Query:   20 SFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL---GSLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            S + E ++ E+ + S+++H  +V LLG CLE E   LLVY+++  G L   LH    + D SL    W  RLKIAI  A  L+YLH   + P++HRD++ ++ILLD     ++   G+   +    +  + ++   L     +  N+G        DVY FG VL+EL++G+  +      +++    H + +     KE     I    +++ED L+E+   A +A  C
Sbjct:  444 SSQVEQFINEVLVLSQINHRNVVKLLGCCLETEVP-LLVYEFITNGTLFDHLHG--SMIDSSLT---WEHRLKIAIEVAGTLAYLHSSASIPIIHRDIKTANILLDVNLTAKVADFGASRLIPMDKEELETMVQGTLGYLDPEYYNTG--LLNEKSDVYSFGVVLMELLSGQKALCFKRPQSSK----HLVSYFATATKENRLDEIIGGEVMNEDNLKEIQEAARIAAEC 661          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: FERON_ARATH (Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 64/207 (30.92%), Postives = 103/207 (49.76%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGD-SHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKS---DDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            +  E+++ S++ H  LV L+G C E   E +LVY YM  G +   L++  +       SL W  RL+I IGAA GL YLH      ++HRDV+ ++ILLD+K+  ++    LS+     D +H + + +  +    D         T   DVY FG VL E +  +  ++ +   +  +  EW  +       + K ML +I+DP L
Sbjct:  578 FQTEIEMLSKLRHRHLVSLIGYC-EENCEMILVYDYMAHGTMREHLYKTQN------PSLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYL-DPEYFRRQQLTEKSDVYSFGVVLFEALCARPALNPTLAKEQVSLAEWAPY------CYKKGMLDQIVDPYL 770          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 69/204 (33.82%), Postives = 102/204 (50.00%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGD-SHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            +  E+++ S+  H  LV L+G C E+  E +LVY+YM  G L S L+         L SL W  RL+I IG+A GL YLH     P++HRDV++++ILLD+    ++    LS+   + D +H +   +  +    D         T   DVY FG V+ E++  +  I   D   TRE +      +    K  L  IIDPSL
Sbjct:  523 FRTEIEMLSQFRHRHLVSLIGYCDENN-EMILVYEYMENGTLKSHLY------GSGLLSLSWKQRLEICIGSARGLHYLHTGDAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYL-DPEYFRRQQLTEKSDVYSFGVVMFEVLCARPVI---DPTLTREMVNLAEWAMKWQKKGQLEHIIDPSL 715          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: WAKLS_ARATH (Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.540e-17
Identity = 68/225 (30.22%), Postives = 110/225 (48.89%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQGDSHQNVLTRFLWR-QTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKE-MLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            E ++ E+ + S+++H  +V LLG CLE E   LLVY+++  G L   LH         + SL W  RL+IAI  A  ++YLH   + P++HRD++  +ILLD+    ++        +    + + T         D     +       DVY FG VL+EL++G+  +      T++    H + +  L  KE  L +IID   +L+E+   E+   A VA  C
Sbjct:  147 EQFINEVLVLSQINHRNVVKLLGCCLETEVP-LLVYEFITGGSLFDHLHGSM-----FVSSLTWEHRLEIAIEVAGAIAYLHSGASIPIIHRDIKTENILLDENLTAKVADFGASKLKPMDKEQLTTMVQGTLGYLDPEYYTTWLLNEKSDVYSFGVVLMELISGQKALCFERPETSK----HLVSYFVLATKENRLHEIIDDQ-VLNEENQREIHEAARVAVEC 360          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.540e-17
Identity = 68/204 (33.33%), Postives = 103/204 (50.49%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGD-SHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            +  E+++ S+  H  LV L+G C E+  E +L+Y+YM  G + S L+         L SL W  RL+I IGAA GL YLH   + P++HRDV++++ILLD+ F  ++    LS+   + D +H +   +  +    D         T   DVY FG VL E++  +  I   D    RE +      +    K  L +IID SL
Sbjct:  526 FRTEIEMLSQFRHRHLVSLIGYCDENN-EMILIYEYMENGTVKSHLY------GSGLPSLTWKQRLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHVSTAVKGSFGYL-DPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVI---DPTLPREMVNLAEWAMKWQKKGQLDQIIDQSL 718          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: WAK3_ARATH (Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 65/226 (28.76%), Postives = 114/226 (50.44%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLH-RVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL--SELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            + ++ E+ + S+++H  +V +LG CLE E   LLVY+++  G L   LH  + D       SL W  RL+IAI  A  L+YLH   + P++HRD++ ++ILLD+    ++     S+L          + +       D     +       DVY FG VL+EL++G+  +       ++  + +    ++  ++  L +IID   +L+ED L+E+   A +A  C
Sbjct:  454 DQFIHEVLVLSQINHRNVVKILGCCLETEVP-LLVYEFITNGTLFDHLHGSIFD------SSLTWEHRLRIAIEVAGTLAYLHSSASIPIIHRDIKTANILLDENLTAKVADFGASKLIPMDKEQLTTMVQGTLGYL-DPEYYTTGLLNEKSDVYSFGVVLMELLSGQKALCFERPQASKHLVSY---FVSATEENRLHEIIDDQ-VLNEDNLKEIQEAARIAAEC 667          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = 2
Query:   62 SRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL---GSLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGK 526
            +R++H  L PL G C+  E +++ +Y+ +   +L S LH   D       S  W  R KIA+G A  L++LHH C PP+VH +V+A++ILLD   E RL   G +  L  Q    +++       Q  +AS       T   DVY FG VLLELV+GK
Sbjct:  570 ARINHPNLFPLCGYCIATE-QRIAIYEDLDMVNLQSLLHNNGD------DSAPWRLRHKIALGTARALAFLHHGCIPPMVHGEVKAATILLDSSQEPRLADFGLVKLLDEQFPGSESLDGYTPPEQERNAS------PTLESDVYSFGVVLLELVSGK 714          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 58/181 (32.04%), Postives = 93/181 (51.38%), Query Frame = 2
Query:   11 SLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQGDSHQNVLTRF-LWRQTS--------DASNSGSSAATCAYDVYCFGKVLLELVTGK 526
            S  S   + +  EL++ S++ H  LV LLG C +H     LVY+YM  G L   L +V D      Q + W  RL+IA   A  L +LH     P++HRD++ ++ILL+  F  ++G +  L     +   + T+F +++QTS        D     +   +   DVY FG ++L+L+TG+
Sbjct:  491 SAESSLSKQFDQELEILSKIRHPHLVLLLGACPDHGA---LVYEYMENGSLEDRLFQVNDS-----QPIPWFVRLRIAWEVASALVFLHKSKPTPIIHRDLKPANILLNHNFVSKVGDVG-LSTMIQAADPLSTKFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFGMIILQLLTGQ 662          
The following BLAST results are available for this feature:
BLAST of CX287206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
Y5241_ARATH2.076e-1730.73Probable receptor-like protein kinase At5g24010 OS... [more]
Y2214_ARATH2.076e-1732.84Probable receptor-like protein kinase At2g21480 OS... [more]
WAK1_ARATH2.076e-1730.00Wall-associated receptor kinase 1 OS=Arabidopsis t... [more]
FERON_ARATH2.076e-1730.92Receptor-like protein kinase FERONIA OS=Arabidopsi... [more]
Y5597_ARATH2.711e-1733.82Probable receptor-like protein kinase At5g59700 OS... [more]
WAKLS_ARATH3.540e-1730.22Putative wall-associated receptor kinase-like 16 O... [more]
HERK_ARATH3.540e-1733.33Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
WAK3_ARATH4.624e-1728.76Wall-associated receptor kinase 3 OS=Arabidopsis t... [more]
Y5815_ARATH7.887e-1737.97Probably inactive leucine-rich repeat receptor-lik... [more]
PUB53_ARATH7.887e-1732.04Putative U-box domain-containing protein 53 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01005H06SK Veg1 Citrus clementina cDNA clone C01005H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287206 ID=CX287206; Name=CX287206; organism=Citrus clementina; type=EST; length=700bp
AAAAAAGGTCAGTCTGCATTCGTTCAAGAAAGAATCATACATGATGGAAT
TAGATTTGTTCAGCAGAGTTTCACATGCAAGACTGGTGCCACTTTTAGGC
CAATGCTTGGAGCATGAGACAGAGAAACTTTTGGTCTACAAATATATGGT
ATGTGGAGATTTGGCTAGTTCCTTGCACAGGGTTACAGATTTGGAGGATG
ACAGTTTACAATCCCTAGATTGGATTACAAGATTGAAAATTGCAATTGGT
GCGGCGGAAGGTTTATCCTACCTACATCATGAGTGTAACCCTCCTCTTGT
TCACAGAGATGTTCAAGCCAGCAGTATCCTTCTCGATGATAAATTTGAAG
TTCGACTTGGAAGCTTGAGTGAGCTTCATGCTCAAGGAGATTCACACCAA
AATGTGCTAACGAGATTTTTGTGGAGACAAACCTCTGATGCAAGCAATTC
AGGCTCCTCCGCGGCAACTTGTGCCTATGATGTGTACTGCTTTGGAAAAG
TCCTACTTGAGCTTGTAACTGGCAAGCTTGGTATTAGCAAATCAGATGAT
GCTACTACACGAGAGTGGTTGGAACATACACTACCTCACATCACTTTACA
CGACAAGGAAATGTTGACCAAGATCATCGACCCATCTCTGATTCTAGATG
AGGATCTACTGGAAGAAGTATGGGCCATGGCAATTGTAGCCAGATCATGC
back to top