CX287206

Overview
NameCX287206
Unique NameCX287206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig39 contig Ccv1_Contig39:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 73/237 (30.80%), Postives = 114/237 (48.10%), Query Frame = 2
Query:   26 KKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELH-AQGDSHQNVLTRFLWRQTSDASNSGSSAATCAY--------DVYCFGKVLLELVTGKLGISK--SDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLL-EEVWAMAIVARSC 700
            +K   + E+D+   V H  +V LLG C   +   LL Y+YM  G L   LH     +     + +W    +IAIG A+G+ YLHH+C+P +VHRD++ S+ILLD  FE R+         Q D   +V+          A + G  A   AY        D+Y +G +LLE++TGK  +     +  +  +W+        L  KE + +++D S+     L+ EE+  M  +A  C
Sbjct:  762 RKSGVLAEVDVLGNVRHRNIVRLLGCCTNRDCTMLL-YEYMPNGSLDDLLHGG---DKTMTAAAEWTALYQIAIGVAQGICYLHHDCDPVIVHRDLKPSNILLDADFEARVADFGVAKLIQTDESMSVV----------AGSYGYIAPEYAYTLQVDKKSDIYSYGVILLEIITGKRSVEPEFGEGNSIVDWVRS-----KLKTKEDVEEVLDKSMGRSCSLIREEMKQMLRIALLC 979          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 67/222 (30.18%), Postives = 111/222 (50.00%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQGDSHQNVLTRFLWRQTSDASN-SGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            +  E+ + ++V H  LV LLG CL+   EKLLVY+YM  G L+  L    +  ++ L+ L W  RL +A+  A G+ YLH   +   +HRD++ S+ILL D    ++     +    +   ++ TR        A   + +   T   DVY FG +L+EL+TG+  + +S    +   L      + ++ +    K ID ++ LDE+ L  V  +A +A  C
Sbjct:  631 FKSEIAVLTKVRHRHLVTLLGYCLDGN-EKLLVYEYMPQGTLSRHLF---EWSEEGLKPLLWKQRLTLALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRKSLDESQPEESIH-LVSWFKRMYINKEASFKKAIDTTIDLDEETLASVHTVAELAGHC 847          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 66/204 (32.35%), Postives = 108/204 (52.94%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLED-DSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQGDSHQNV-LTRFLWRQTSDASN-SGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            +  +L + SR+ H   V LLG CLE    ++L+Y++   G L   LH    ++  +    L+W  R+KIA GAA+GL +LH +  PP+VHRDV++S++LL D F  ++   +  +A  D+   +  TR L      A   + +   T   DVY FG VLLEL+TG+  +  +     +  +    P ++   ++ + + IDP L
Sbjct:  114 FTSQLSVVSRLKHDHFVELLGYCLE-ANNRILIYQFATKGSLHDVLHGRKGVQGAEPGPVLNWNQRVKIAYGAAKGLEFLHEKVQPPIVHRDVRSSNVLLFDDFVAKMADFNLTNASSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLS---EDKVKQCIDPKL 313          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 69/206 (33.50%), Postives = 111/206 (53.88%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTRFLWRQTSDASN-SGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            + ++ E++   ++SH  LV L+G C E E  +LLVY++M  G L + L R         Q L W  R+K+A+GAA+GL++L HE    +++RD +A++ILLD  F  +L    L++    GD + +V T+ +      A     +   T   DVY FG VLLEL++G+  +  S+       ++   P+  L DK  L +I+D  L
Sbjct:  135 KEWLTEVNYLGQLSHPNLVLLVGYCAEGEN-RLLVYEFMPKGSLENHLFR------RGAQPLTWAIRMKVAVGAAKGLTFL-HEAKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGD-NTHVSTKVIGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELISGRRAMDNSNGGNEYSLVDWATPY--LGDKRKLFRIMDTKL 329          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y5188_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 72/227 (31.72%), Postives = 114/227 (50.22%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL---GSLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDAT-TREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            + +  E++L  RV H  LV L+G C + +    L+Y+YM  GDL  ++             L W  R++IA+ AA+GL YLH+ C PP+VHRDV+ ++ILL++++  +L   G        G+SH + +         D     ++  +   DVY FG VLLE+VT +    K+ + T   EW+   L       K  +  I+DP L+ D D     W +  +A +C
Sbjct:  604 KEFKAEVELLLRVHHRNLVGLVGYCDDGDN-LALIYEYMANGDLKENMSGKR-----GGNVLTWENRMQIAVEAAQGLEYLHNGCTPPMVHRDVKTTNILLNERYGAKLADFGLSRSFPVDGESHVSTVVAGT-PGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTNQPVTDKTRERTHINEWVGSML------TKGDIKSILDPKLMGDYD-TNGAWKIVELALAC 816          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: PAM74_ARATH (Probable LRR receptor-like serine/threonine-protein kinase PAM74 OS=Arabidopsis thaliana GN=PAM74 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 73/229 (31.88%), Postives = 117/229 (51.09%), Query Frame = 2
Query:   38 YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL---GSLSELHAQGDSHQNVLTR----FLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKS-DDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            +  E+DL  RV H  LV L+G C E +    L+Y+++  GDL   L   +         ++W  RL+IA+ AA GL YLH  C PP+VHRD++ ++ILLD++ + +L   G        G++H + +      +L  +    +  G  +     DVY FG VLLE++T +  I +S   +   +W+   L       +  +TKI+DP+L  D +    VW +  +A SC
Sbjct:  620 FKAEVDLLLRVHHTNLVSLVGYCDERD-HLALIYEFLPKGDLRQHLSGKS-----GGSFINWGNRLRIALEAALGLEYLHSGCTPPIVHRDIKTTNILLDEQLKAKLADFGLSRSFPIGGETHISTVVAGTPGYLDPEYYQTTRLGEKS-----DVYSFGIVLLEIITNQPVIDQSRSKSHISQWVGFEL------TRGDITKIMDPNLNGDYE-SRSVWRVLELAMSC 830          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: MEE39_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MEE39 OS=Arabidopsis thaliana GN=MEE39 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 77/227 (33.92%), Postives = 115/227 (50.66%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL---GSLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKS-DDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            + +  E++L  RV H  LV L+G C E +    L+Y+YM  GDL   L   +     S+  L+W TRL+IAI AA GL YLH  C P +VHRDV++++ILLD++F+ ++   G        GD  Q            D     +S  +   DVY FG +LLE++T +  I ++ ++    EW+   +       K   ++I+DP L  + D    VW    VA SC
Sbjct:  605 KEFKAEVELLLRVHHINLVNLVGYCDEQD-HFALIYEYMSNGDLHQHL---SGKHGGSV--LNWGTRLQIAIEAALGLEYLHTGCKPAMVHRDVKSTNILLDEEFKAKIADFGLSRSFQVGGDQSQVSTVVAGTLGYLDPEYYLTSELSEKSDVYSFGILLLEIITNQRVIDQTRENPNIAEWVTFVI------KKGDTSQIVDPKLHGNYD-THSVWRALEVAMSC 818          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 77/228 (33.77%), Postives = 119/228 (52.19%), Query Frame = 2
Query:   32 ESYMMELDLFSRVSHARLVPLLGQCLEHETEKL-LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL---GSLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKS-DDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSC 700
            + +  E++L  RV H  LV L+G C   E +KL L+Y+YM  GDL   +   +     S+  L+W TRLKIA+ AA+GL YLH+ C P +VHRDV+ ++ILL++ F+ +L   G       +G++H + +         D     ++  T   DVY FG VLL ++T +  I ++ +     EW+   L       K  +  I DP+L+ D +    VW    +A SC
Sbjct:  616 KQFKAEVELLLRVHHKNLVGLVGYC--EEGDKLALIYEYMANGDLDEHM---SGKRGGSI--LNWGTRLKIALEAAQGLEYLHNGCKPLMVHRDVKTTNILLNEHFDTKLADFGLSRSFPIEGETHVSTVVAGTIGYL-DPEYYRTNWLTEKSDVYSFGVVLLVMITNQPVIDQNREKRHIAEWVGGML------TKGDIKSITDPNLLGDYN-SGSVWKAVELAMSC 828          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 70/229 (30.57%), Postives = 115/229 (50.22%), Query Frame = 2
Query:   26 KKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHA--QGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIID--PSLILDEDLLEEVWAMAIVARSC 700
            K E ++ E+ + S+++H  +V L+G CLE E   +LVY+++  GDL   LH      D    ++ W  RL+I++  A  L+YLH   + P+ HRDV+ ++ILLD+K+  ++       +     +H   L    +    D     +S  T   DVY FG VL+EL+TG+   S       R  + H       ++     +++D   S I +   LE+V A+A +AR C
Sbjct:  458 KVEEFINEVGVLSQINHRNIVKLMGCCLETEVP-ILVYEHIPNGDLFKRLHH-----DSDDYTMTWDVRLRISVEIAGALAYLHSAASTPVYHRDVKTTNILLDEKYRAKVSDFGTSRSINVDQTHLTTLVAGTFGYL-DPEYFQTSQFTDKSDVYSFGVVLVELITGEKPFSVMRPEENRGLVSH------FNEAMKQNRVLDIVDSRIKEGCTLEQVLAVAKLARRC 673          
BLAST of CX287206 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 66/195 (33.85%), Postives = 102/195 (52.31%), Query Frame = 2
Query:   62 SRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG--SLSELHAQGDSHQNVLTRFLWRQTSDASNSGSSAATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSL 640
            S++ H  +  L+G C E +   +LVY+Y   G    SLH    L D   + L W TR++IA+G A  + YLH  C+P ++H+++++S+ILLD     RL    LS+ + +  + QN+   +   +  D      SA T   DVY FG V+LEL+TG++          R  +    P   LHD + L+ I DP+L
Sbjct:  455 SKIRHQNIAELVGYCSE-QGHNMLVYEYFRNG----SLHEFLHLSDCFSKPLTWNTRVRIALGTARAVEYLHEACSPSVMHKNIKSSNILLDADLNPRLSDYGLSKFYLR--TSQNLGEGYNAPEARD-----PSAYTPKSDVYSFGVVMLELLTGRVPFDGEKPRPERSLVRWATPQ--LHDIDALSNIADPAL 635          
The following BLAST results are available for this feature:
BLAST of CX287206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
Y5148_ARATH1.176e-2030.80Probable leucine-rich repeat receptor-like protein... [more]
TMK1_ARATH1.176e-2030.18Probable receptor protein kinase TMK1 OS=Arabidops... [more]
Y2197_ARATH1.536e-2032.35Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
APK2A_ARATH1.536e-2033.50Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
Y5188_ARATH2.006e-2031.72Probable LRR receptor-like serine/threonine-protei... [more]
PAM74_ARATH2.006e-2031.88Probable LRR receptor-like serine/threonine-protei... [more]
MEE39_ARATH2.006e-2033.92Probable LRR receptor-like serine/threonine-protei... [more]
Y5181_ARATH3.421e-2033.77Probable LRR receptor-like serine/threonine-protei... [more]
WAKLI_ARATH3.421e-2030.57Wall-associated receptor kinase-like 22 OS=Arabido... [more]
SRF5_ARATH3.421e-2033.85Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC01005H06SK Veg1 Citrus clementina cDNA clone C01005H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287206 ID=CX287206; Name=CX287206; organism=Citrus clementina; type=EST; length=700bp
AAAAAAGGTCAGTCTGCATTCGTTCAAGAAAGAATCATACATGATGGAAT
TAGATTTGTTCAGCAGAGTTTCACATGCAAGACTGGTGCCACTTTTAGGC
CAATGCTTGGAGCATGAGACAGAGAAACTTTTGGTCTACAAATATATGGT
ATGTGGAGATTTGGCTAGTTCCTTGCACAGGGTTACAGATTTGGAGGATG
ACAGTTTACAATCCCTAGATTGGATTACAAGATTGAAAATTGCAATTGGT
GCGGCGGAAGGTTTATCCTACCTACATCATGAGTGTAACCCTCCTCTTGT
TCACAGAGATGTTCAAGCCAGCAGTATCCTTCTCGATGATAAATTTGAAG
TTCGACTTGGAAGCTTGAGTGAGCTTCATGCTCAAGGAGATTCACACCAA
AATGTGCTAACGAGATTTTTGTGGAGACAAACCTCTGATGCAAGCAATTC
AGGCTCCTCCGCGGCAACTTGTGCCTATGATGTGTACTGCTTTGGAAAAG
TCCTACTTGAGCTTGTAACTGGCAAGCTTGGTATTAGCAAATCAGATGAT
GCTACTACACGAGAGTGGTTGGAACATACACTACCTCACATCACTTTACA
CGACAAGGAAATGTTGACCAAGATCATCGACCCATCTCTGATTCTAGATG
AGGATCTACTGGAAGAAGTATGGGCCATGGCAATTGTAGCCAGATCATGC
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