CX287209

Overview
NameCX287209
Unique NameCX287209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287209 vs. ExPASy Swiss-Prot
Match: CAMT_ZINEL (Caffeoyl-CoA O-methyltransferase OS=Zinnia elegans GN=CCOAOMT PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.612e-24
Identity = 60/161 (37.27%), Postives = 97/161 (60.25%), Query Frame = 3
Query:  204 LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA-SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 674
            LY YIL      REP+ +++LR  TA    + M  S D+ Q L +L++++ A+  +E+GVYTGYS L+ AL LPE G ++A + +  + E+     ++AGV+HK+  + G A   L  ++ + +   S+DF FVDA+K  Y  Y + L+ L++ GG+I  D
Sbjct:   27 LYQYILETSVYPREPQPMKELRRITAKHPWNLMTTSADEGQFLNLLLKLINAKNTMEIGVYTGYSLLSTALALPEDGKILALDINRENYEIGLPIIQKAGVAHKIDFREGPALPLLDQMLQDEKCHGSFDFIFVDADKDNYLNYHKRLIDLVKFGGVIGYD 187          
BLAST of CX287209 vs. ExPASy Swiss-Prot
Match: CAMT_CITNA (Caffeoyl-CoA O-methyltransferase OS=Citrus natsudaidai PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  204 LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 674
            L  YIL      REPE +++LRE TA    + M+ S D+ Q L M ++++ A+  +E+GVYT YS LA AL +P+ G ++A + +  + E+     E+AGV+H+++ + G A   L  L+ + +   +YDF FVDA+K  Y  Y + ++ L++VGG+I  D
Sbjct:   14 LRQYILETSVYPREPESMKELREVTAKHPWNLMRTSADEGQFLNMSLKLINAKNTMEIGVYTDYSLLATALAIPDDGKILAMDINRENYEIGLPKIEKAGVAHRIQFREGPALPVLDQLVEDKKNHGTYDFIFVDADKDNYINYHKRIIDLVKVGGLIGYD 174          
BLAST of CX287209 vs. ExPASy Swiss-Prot
Match: CAMT_STELP (Caffeoyl-CoA O-methyltransferase OS=Stellaria longipes PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.381e-22
Identity = 65/161 (40.37%), Postives = 92/161 (57.14%), Query Frame = 3
Query:  204 LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 674
            L+ YIL      RE E L++LR+ T     S M  SP   QLL+ +++ +  ++ IEVGV+TGYS LA AL +P+ G + A + D  +  V     ++AGV  K+      A   L  L+ +G    SYDFAFVDA+K  Y  Y E L++L++VGGII  D
Sbjct:   24 LHQYILDTSVFPRESEHLKELRKATESHPMSFMGTSPLAGQLLSFMLKTVKPKKTIEVGVFTGYSLLATALSIPDDGKITAVDIDREAYNVGLALIKKAGVESKISFIVSDAMTLLDDLLADGRYQGSYDFAFVDADKTNYVNYHERLIELVKVGGIIAYD 184          
The following BLAST results are available for this feature:
BLAST of CX287209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CAMT_ZINEL3.612e-2437.27Caffeoyl-CoA O-methyltransferase OS=Zinnia elegans... [more]
CAMT_CITNA1.793e-2337.27Caffeoyl-CoA O-methyltransferase OS=Citrus natsuda... [more]
CAMT_STELP3.381e-2240.37Caffeoyl-CoA O-methyltransferase OS=Stellaria long... [more]

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Properties
Property NameValue
Genbank descriptionC01005H09SK Veg1 Citrus clementina cDNA clone C01005H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287209 ID=CX287209; Name=CX287209; organism=Citrus clementina; type=EST; length=675bp
GCTTGGTGGCGAATCGTTTTGCTTTTGTTTTACTGAAAACTGAAAAAACG
GTTGCCAAATTCCATTCCTTTCCCTTATCTGAAAGATTGAGATTGAGACC
CTGCAAGTTTAAGACTAAGAATCAGTTCACCACAAACTGCTGTGTTTCCT
CTGCCCATGACGAAAAGTACAGCAACAAGCAAGTCATCAGTGTAACTCCT
CCCCTTTACGACTACATCCTCCGAAATGTTCGTGAGCCCGAGATTTTGCG
TCAACTGCGGGAAGAGACTGCTGGTATGCGTGGTAGCCAGATGCAGGTTT
CGCCAGATCAAGCACAGCTACTTGCAATGCTTGTACAGATTCTCGGTGCA
CAACGGTGTATAGAAGTTGGTGTGTATACTGGATACTCATCATTGGCTAT
TGCACTAGTGCTGCCGGAATCTGGTTGTCTTGTTGCTTGTGAAAGAGATG
CCAGGTCTCTTGAGGTTGCAAAAAAGTATTATGAGCGAGCTGGTGTTTCG
CATAAGGTAAAAATTAAGCATGGATTAGCAGCAGATTCCCTAAAAGCTCT
GATTTTGAATGGCGAAGCTTCCAGCTATGATTTTGCATTTGTTGATGCTG
AAAAAAGGATGTACCAGGAGTACTTTGAATTGTTGCTGCAACTGATCAGA
GTTGGGGGAATCATCGTAATTGATA
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