CX287218
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 7.499e-19 Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 2 Query: 146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDA 385 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTDA Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDA 128
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.279e-18 Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2 Query: 146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD Sbjct: 44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTD 128
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.279e-18 Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2 Query: 146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD Sbjct: 34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTD 118
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.279e-18 Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2 Query: 146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382 M VW P K FET S+LPPL+DE + K++ Y+L + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTD 127
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14 Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 2 Query: 191 SYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382 SYLPPL+DE + K++ Y+L + W PCLEF ++ + ++ G Y D RYWTMWKLPM+GCTD Sbjct: 2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTD 71
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13 Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 2 Query: 278 ELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385 ELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ Sbjct: 1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDS 36 The following BLAST results are available for this feature:
BLAST of CX287218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 106
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287218 ID=CX287218; Name=CX287218; organism=Citrus clementina; type=EST; length=385bpback to top |