CX287218

Overview
NameCX287218
Unique NameCX287218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:72..456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 3.223e-54
Identity = 95/122 (77.87%), Postives = 107/122 (87.70%), Query Frame = 2
Query:   20 SLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            S AQA+MVAPFTGLKSSSAFP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L++  L KE+ YLLR+ WIPC+EFELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+
Sbjct:   14 SPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDS 135          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 7.180e-54
Identity = 93/122 (76.23%), Postives = 107/122 (87.70%), Query Frame = 2
Query:   20 SLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            S AQA+MVAPFTGLKSS++FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L+D  L KE+ YLLR+ WIPC+EFELE G+VYREH ++PGYYDGRYWTMWKLP++GCTD+
Sbjct:   14 SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDS 135          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.377e-54
Identity = 92/128 (71.88%), Postives = 111/128 (86.72%), Query Frame = 2
Query:    2 ATENRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            A   R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:   10 AVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDA 137          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 9.377e-54
Identity = 96/128 (75.00%), Postives = 111/128 (86.72%), Query Frame = 2
Query:    2 ATENRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLP L+   L KE+ YLLRS WIPCLEFELE+G+V+R++ S P YYDGRYWTMWKLPM+GCTD+
Sbjct:   12 ATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDS 139          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.377e-54
Identity = 99/127 (77.95%), Postives = 105/127 (82.68%), Query Frame = 2
Query:    5 TENRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            T NRA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:   13 TVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDA 135          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.377e-54
Identity = 92/128 (71.88%), Postives = 111/128 (86.72%), Query Frame = 2
Query:    2 ATENRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            A+ N AS AQASMVAPFTGLKSS+ FP T+K N DIT++ASN G+VQCMKVWPP GL+KFETLSYLP +S+E L KE  YLLR+GW+PC+EF++  G+VYRE+H SPG+YDGRYWTMWKLPM+GCTD+
Sbjct:   12 ASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDS 139          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.377e-54
Identity = 93/119 (78.15%), Postives = 107/119 (89.92%), Query Frame = 2
Query:   26 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTD 382
            AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD
Sbjct:   20 AQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTD 137          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.377e-54
Identity = 92/128 (71.88%), Postives = 111/128 (86.72%), Query Frame = 2
Query:    2 ATENRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            A   R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:   10 AVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDA 137          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.225e-53
Identity = 99/127 (77.95%), Postives = 106/127 (83.46%), Query Frame = 2
Query:    5 TENRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            T NRA    A MVAPFTGLKS + FP T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+VYREH+ SP YYDGRYWTMWKLPM+GCTDA
Sbjct:   13 TVNRAG---AGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDA 135          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.225e-53
Identity = 92/129 (71.32%), Postives = 111/129 (86.05%), Query Frame = 2
Query:    2 ATENRASLAQA-SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            A   R ++ QA SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:   10 AVATRTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDA 138          
The following BLAST results are available for this feature:
BLAST of CX287218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS1_BRANA3.223e-5477.87Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1B_ARATH7.180e-5476.23Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS_TOBAC9.377e-5471.88Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GOSHI9.377e-5475.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA9.377e-5477.95Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA9.377e-5471.88Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_MESCR9.377e-5478.15Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_NICSY9.377e-5471.88Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOYBN1.225e-5377.95Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_SOLTU1.225e-5371.32Ribulose bisphosphate carboxylase small chain 1, c... [more]

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Properties
Property NameValue
Genbank descriptionC01006A08SK Veg1 Citrus clementina cDNA clone C01006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287218 ID=CX287218; Name=CX287218; organism=Citrus clementina; type=EST; length=385bp
TGCCACCGAGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCT
TCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAAC
AATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAA
GGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCC
CGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGC
TCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTA
CCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAA
TGTGGAAGCTGCCCATGTATGGGTGCACAGATGCA
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