CX287218

Overview
NameCX287218
Unique NameCX287218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:72..456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.549e-48
Identity = 87/124 (70.16%), Postives = 103/124 (83.06%), Query Frame = 2
Query:   14 RASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            RA  AQ +MV PF   +SS  FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:   15 RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDA 136          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 2.643e-48
Identity = 85/124 (68.55%), Postives = 103/124 (83.06%), Query Frame = 2
Query:   14 RASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            R   AQ +MV  F G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:   10 RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDA 132          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.887e-48
Identity = 86/124 (69.35%), Postives = 103/124 (83.06%), Query Frame = 2
Query:   14 RASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            RA  AQ+SMV PF   +SS  FPAT+K NN+++++  NGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:   15 RAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDA 136          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.572e-45
Identity = 83/128 (64.84%), Postives = 104/128 (81.25%), Query Frame = 2
Query:    2 ATENRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            A  +R S AQ++MV PF GL SS+AFP T+K   D + + SNG RV+CM+VWPP G KKFETLSYLPPL+ E L +E+ YL+R+GWIPC+EF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD+
Sbjct:   10 AAVSRTSPAQSNMVVPFAGLHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDS 135          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.024e-44
Identity = 77/120 (64.17%), Postives = 101/120 (84.17%), Query Frame = 2
Query:   26 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            + A+ VAPF GLKS++  P ++++N    S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDA 125          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.157e-44
Identity = 78/120 (65.00%), Postives = 99/120 (82.50%), Query Frame = 2
Query:   26 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            + A+ VAPF GLKS++  P + ++ +   S  SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF  + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDA
Sbjct:    8 SSATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDA 126          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.797e-44
Identity = 77/120 (64.17%), Postives = 100/120 (83.33%), Query Frame = 2
Query:   26 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            + A+ VAPF GLKS++  P ++++   + S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EAL K++ YL+RS W+PCLEF  + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDA
Sbjct:    8 SSATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDA 125          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.797e-44
Identity = 78/120 (65.00%), Postives = 96/120 (80.00%), Query Frame = 2
Query:   26 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            + A+ VAPF GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:    8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDA 126          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.797e-44
Identity = 78/120 (65.00%), Postives = 96/120 (80.00%), Query Frame = 2
Query:   26 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            + A+ VAPF GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:    8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDA 126          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.149e-43
Identity = 78/120 (65.00%), Postives = 97/120 (80.83%), Query Frame = 2
Query:   26 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            + A+ VAPF GLKS++  P ++++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDA 126          
The following BLAST results are available for this feature:
BLAST of CX287218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS4_LEMGI1.549e-4870.16Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS1_LEMGI2.643e-4868.55Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS3_LEMGI5.887e-4869.35Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS_ZANAE3.572e-4564.84Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HORVU3.024e-4464.17Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT5.157e-4465.00Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_WHEAT8.797e-4464.17Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS1_ORYSJ8.797e-4465.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI8.797e-4465.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ1.149e-4365.00Ribulose bisphosphate carboxylase small chain A, c... [more]

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Properties
Property NameValue
Genbank descriptionC01006A08SK Veg1 Citrus clementina cDNA clone C01006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287218 ID=CX287218; Name=CX287218; organism=Citrus clementina; type=EST; length=385bp
TGCCACCGAGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCT
TCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAAC
AATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAA
GGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCC
CGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGC
TCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTA
CCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAA
TGTGGAAGCTGCCCATGTATGGGTGCACAGATGCA
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