CX287218

Overview
NameCX287218
Unique NameCX287218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:72..456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.305e-42
Identity = 72/117 (61.54%), Postives = 94/117 (80.34%), Query Frame = 2
Query:   26 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGC 376
            + A+ VAPF GLKS++  P ++++N       SNGGR++CM+VWP  G+KKFETLSYLPPLS E LLK++ YL+RS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GC
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGC 123          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.086e-41
Identity = 73/120 (60.83%), Postives = 95/120 (79.17%), Query Frame = 2
Query:   26 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            + A+  APF GLKS+++ P  +++   +  + SNGGR++CM+VWP  G KKFETLSYLPPL+ E LLK++ YLLR+ W+PCLEF  E G+VYRE+ +SP YYDGRYWTMWKLPM+GCTDA
Sbjct:    8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDA 125          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.086e-41
Identity = 74/120 (61.67%), Postives = 98/120 (81.67%), Query Frame = 2
Query:   26 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            + A+ VAPF GLKS+++ P  ++++  + ++ SNGGR++CM+VWP  G KKFETLSYLPPLS + LLK++ YLLR+GWIPCLEF  + G+VYRE+ +SP YYDGRYWTMWKLPM+GC DA
Sbjct:    9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDA 126          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.242e-39
Identity = 74/127 (58.27%), Postives = 97/127 (76.38%), Query Frame = 2
Query:   17 ASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            A    A++V+ FTGLKS++ FP++ K +N          SNGGRV+CM+VWPP G  KFETLSYLP L++E L+KE+ YLLR+ W+PCLEF+LE G + R+++ SPGYYDGRYW MWKLPM+GCT+A
Sbjct:    5 AGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEA 130          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.238e-38
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 2
Query:  110 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTD 382
            T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFEL KG+VY EH+ SP YYDGRYWTMWKLPM+G TD
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTD 92          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.031e-36
Identity = 70/122 (57.38%), Postives = 91/122 (74.59%), Query Frame = 2
Query:   32 ASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            +++V+ FTGLKS + FP++K  +N          SNG RV+CM+VWPP   KKFETLSYLP L+ E L+KE+ YLL++ W+PCLEFE E G + R + +SPGYYDGRYW MWKLPM+GCT+A
Sbjct:   26 SNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEA 146          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.033e-32
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTD 382
            M+VWPP GLKKFETLSYLPPL+ E LL E++YLL  GWIP LEFE++ G+VYREH  SPGYYDGRYWTMWKLPM+G TD
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTD 79          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 2
Query:  110 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            T   +NG RV CM+VW P    KFETLSYLPPLS +AL K+I Y+++SGW PC+EF+++ G V RE  + PGYYDGRYWTMWKLPM+GCTD+
Sbjct:   47 TKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDS 137          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.411e-25
Identity = 47/65 (72.31%), Postives = 59/65 (90.77%), Query Frame = 2
Query:  191 SYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDA 385
            +YLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDA
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDA 64          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.614e-21
Identity = 47/85 (55.29%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382
            M VW P   K FET SYLPPLSDE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRD 130          
The following BLAST results are available for this feature:
BLAST of CX287218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS_AEGTA6.305e-4261.54Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY4.086e-4160.83Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE4.086e-4161.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH2.242e-3958.27Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA3.238e-3874.73Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA3.031e-3657.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL2.033e-3275.95Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_MARPA1.721e-3163.04Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT1.411e-2572.31Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_CHLRE1.614e-2155.29Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionC01006A08SK Veg1 Citrus clementina cDNA clone C01006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287218 ID=CX287218; Name=CX287218; organism=Citrus clementina; type=EST; length=385bp
TGCCACCGAGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCT
TCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAAC
AATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAA
GGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCC
CGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGC
TCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTA
CCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAA
TGTGGAAGCTGCCCATGTATGGGTGCACAGATGCA
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