CX287218

Overview
NameCX287218
Unique NameCX287218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:72..456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.754e-21
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382
            M VW P   K FET SYLPPL+DE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRD 130          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.046e-20
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 2
Query:   77 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382
            FP   K N      ASN    +C  M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD
Sbjct:   22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTD 128          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.367e-20
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREH-----HSSPGYYDGRYWTMWKLPMYGCTDA 385
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++      ++ GYYD RYWTMWKLPM+GCTDA
Sbjct:  135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDA 220          

HSP 2 Score: 98.2117 bits (243), Expect = 1.367e-20
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREH-----HSSPGYYDGRYWTMWKLPMYGCTDA 385
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++      ++ GYYD RYWTMWKLPM+GCTDA
Sbjct:  279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDA 364          

HSP 3 Score: 98.2117 bits (243), Expect = 1.367e-20
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREH-----HSSPGYYDGRYWTMWKLPMYGCTDA 385
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++      ++ GYYD RYWTMWKLPM+GCTDA
Sbjct:  566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDA 651          

HSP 4 Score: 98.2117 bits (243), Expect = 1.367e-20
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREH-----HSSPGYYDGRYWTMWKLPMYGCTDA 385
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++      ++ GYYD RYWTMWKLPM+GCTDA
Sbjct:  709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDA 794          

HSP 5 Score: 98.2117 bits (243), Expect = 1.367e-20
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREH-----HSSPGYYDGRYWTMWKLPMYGCTDA 385
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++      ++ GYYD RYWTMWKLPM+GCTDA
Sbjct:  854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDA 939          

HSP 6 Score: 98.2117 bits (243), Expect = 1.367e-20
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREH-----HSSPGYYDGRYWTMWKLPMYGCTDA 385
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++      ++ GYYD RYWTMWKLPM+GCTDA
Sbjct:  997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDA 1082          

HSP 7 Score: 98.2117 bits (243), Expect = 1.367e-20
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREH-----HSSPGYYDGRYWTMWKLPMYGCTDA 385
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++      ++ GYYD RYWTMWKLPM+GCTDA
Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDA 1226          

HSP 8 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREH-----HSSPGYYDGRYWTMWKLPMYGCTDA 385
            MKVW P   KKFET SYLPPLSD  + K++  ++  G  PCLEF   E  ++  ++      ++ GYYD  YWTMWKLPM+GCTDA
Sbjct:  422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDA 507          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.331e-20
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  149 KVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFE------LEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTD 382
            KVW P   K++ET SYLPPL+++ + +++ Y++ +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTD 113          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.859e-20
Identity = 50/115 (43.48%), Postives = 62/115 (53.91%), Query Frame = 2
Query:   56 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382
            G    SA P          + A N  R   M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD
Sbjct:   15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTD 127          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.157e-19
Identity = 52/129 (40.31%), Postives = 69/129 (53.49%), Query Frame = 2
Query:   17 ASLAQASMVAPFTGLKSSSAFPATKKTNNDITS-IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382
            A++   ++V    G   SS+ P          S +A    R   M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD
Sbjct:    3 AAMMNKTIVVSKDGCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTD 129          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.577e-19
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  122 SNG--GRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFE-LEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382
            SNG   + + M VW P   K FET SYLPPL+D+ + K++ Y+LR+ W PCLEF   ++ +V  ++    G     Y D RYWTMWKLPM+GC D
Sbjct:   26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCID 120          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.577e-19
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTD 127          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.366e-19
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 2
Query:   71 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382
            +A P    +     S  +N  R   M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD
Sbjct:   20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTD 127          
BLAST of CX287218 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.397e-19
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  146 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTD 382
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTD 128          
The following BLAST results are available for this feature:
BLAST of CX287218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS1_CHLRE2.754e-2154.12Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_ACECL1.046e-2046.36Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_EUGGR1.367e-2052.33Ribulose bisphosphate carboxylase small chains, ch... [more]
RBS_CHLMO2.331e-2048.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_ACECL8.859e-2043.48Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS5_ACECL1.157e-1940.31Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_BATOE2.577e-1947.37Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_ACECL2.577e-1950.59Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS4_ACEAT3.366e-1942.73Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS7_ACECL4.397e-1950.59Ribulose bisphosphate carboxylase small chain 7, c... [more]

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Properties
Property NameValue
Genbank descriptionC01006A08SK Veg1 Citrus clementina cDNA clone C01006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287218 ID=CX287218; Name=CX287218; organism=Citrus clementina; type=EST; length=385bp
TGCCACCGAGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCT
TCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAAC
AATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAA
GGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCC
CGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGC
TCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTA
CCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAA
TGTGGAAGCTGCCCATGTATGGGTGCACAGATGCA
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