CX287221

Overview
NameCX287221
Unique NameCX287221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287221_ssr205 microsatellite CX287221_ssr205:205..226. BLAST: Citrus ESTs to Prunus persica proteins V1
CX287221_ssr244 microsatellite CX287221_ssr244:244..255. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig562 contig Ccv1_Contig562:28..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287221 vs. ExPASy Swiss-Prot
Match: GDL14_ARATH (GDSL esterase/lipase At1g29660 OS=Arabidopsis thaliana GN=At1g29660 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = -1 
Query:  270 NFISNPRAFGFTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIV-QEFMTGSTEYMYPMNLSTIMAL 515
            + I+NP A+GFT +  ACCG G   G   C P    C NR+ Y FWD FHPS  AN  I  + +    +  +YP+++S +  L
Sbjct:  282 DIIANPSAYGFTNTNTACCGIGRNGGQLTCLPGEPPCLNRDEYVFWDAFHPSAAANTAIAKRSYNAQRSSDVYPIDISQLAQL 364
The following BLAST results are available for this feature:
BLAST of CX287221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GDL14_ARATH1.186e-1139.76GDSL esterase/lipase At1g29660 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC01006A12SK Veg1 Citrus clementina cDNA clone C01006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287221 ID=CX287221; Name=CX287221; organism=Citrus clementina; type=EST; length=518bp
AACAGAAGTAAGATTTCATTGAACATTACGCATACAATTGGCCAATATCA
TAAGTTACTACAGCAACGAAAAATCACAAAAGGCAACAAACAGTAGTACG
GGTTTGAAGATACATATTATTCTCAACACAGACACACGCAGCATTAATGG
CCCTAATTGCCTTGAAACAGGCCGATATATATTAGCTCTGTGTGTGTATG
TGTGTATATATATATATATATATATATGTATATGTAACAAAGGTGATTGA
TTGATTATGTCCTTGAATCCAAGGCCATGATGGTGCTGAGATTCATGGGA
TACATGTACTCAGTCGAACCAGTCATGAATTCTTGAACAATAAATCCATT
TGCTCTTTCAGATGGATGAAATGGATCCCAAAATGCATACACATTTCTAT
TTGGGCATAAGTTGGATGCCGGAGTGCACAATCCTAGGCCATTGTATGGC
CCTTGCCCGCAACATGCAACCTTTGATGTTGTAAATCCGAACGCTCGAGG
GTTACTGATGAAGTTATA
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