CX287251

Overview
NameCX287251
Unique NameCX287251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length371
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:444..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVL E+ E +K YP++++RIIGFDN RQVQCISF+A KPPG
Sbjct:  135 TDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:  138 TDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:  138 TDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136
            TDATQVL E+ E  K YP S +RIIGFDNKRQVQCISF+A KPP
Sbjct:  137 TDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.131e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    8 DATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 142
            D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISF+A KPPGV
Sbjct:  138 DSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 136
            TDA+QVLKE+ E +  YP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  133 TDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  135 TDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  128 TDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  128 TDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of CX287251 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 2
Query:    5 TDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 139
            TD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  133 TDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177          
The following BLAST results are available for this feature:
BLAST of CX287251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RBS1_PETHY3.008e-1271.11Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS_PYRPY3.928e-1271.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP3.928e-1271.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR3.928e-1275.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE5.131e-1271.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA8.752e-1270.45Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL8.752e-1273.33Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS7_FLAPR8.752e-1266.67Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_FLAPR8.752e-1266.67Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_FLAPR8.752e-1266.67Ribulose bisphosphate carboxylase small chain 4, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01006E02SK Veg1 Citrus clementina cDNA clone C01006E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287251 ID=CX287251; Name=CX287251; organism=Citrus clementina; type=EST; length=371bp
AGGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGG
AATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAA
GTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAGGTTCC
CAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGT
GTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAA
TTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTCC
CCGACTTTGGCTTTTTTTTTTTATATATATTTTAATAATTGAATCCTTTG
TTTTCAAAGGGGGGGCCCGGT
back to top