CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PLAOC (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Platanus occidentalis GN=ndhC PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 9.071e-60
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLIISSVIPILAFLIS VLAPI++GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIISSVIPILAFLISGVLAPISEGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEALIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_NANDO (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Nandina domestica GN=ndhC PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.547e-59
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLIISSVIPILAFLIS VLAPI++GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIISSVIPILAFLISGVLAPISEGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_VITVI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Vitis vinifera GN=ndhC PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISSVIPILAF IS VLAPI+KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFFISGVLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_DAUCA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Daucus carota GN=ndhC PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS+IPILAF +S VLAPINKGPEKLSSYESGIEPMG+AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG+ VF+EA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSLIPILAFFVSGVLAPINKGPEKLSSYESGIEPMGNAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGISVFVEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SOYBN (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Glycine max GN=ndhC PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.639e-59
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS IPILAFLIS +LAPI+KGPEKLSSYESGIEP+GDAWLQFRIRYYMFAL+FVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSFIPILAFLISGILAPISKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALIFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_BUXMI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Buxus microphylla GN=ndhC PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.639e-59
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL++YDIFWAFLIISSVIPILAFLIS VLAPI+KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIISSVIPILAFLISGVLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_TOBAC (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Nicotiana tabacum GN=ndhC PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.447e-59
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YD FWAFLIIS ++PILAFLIS VLAPI+KGPEKLS+YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDFFWAFLIISILVPILAFLISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PANGI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Panax ginseng GN=ndhC PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.447e-59
Identity = 111/120 (92.50%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS+IPILAF IS VLAPI+KGPEKLSSYESGIEPMG+AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSLIPILAFFISGVLAPISKGPEKLSSYESGIEPMGNAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_NICTO (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Nicotiana tomentosiformis GN=ndhC PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.447e-59
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YD FWAFLIIS ++PILAFLIS VLAPI+KGPEKLS+YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDFFWAFLIISILVPILAFLISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_NICSY (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Nicotiana sylvestris GN=ndhC PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.447e-59
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YD FWAFLIIS ++PILAFLIS VLAPI+KGPEKLS+YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDFFWAFLIISILVPILAFLISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_PLAOC9.071e-6093.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_NANDO1.547e-5993.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_VITVI2.021e-5993.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_DAUCA2.021e-5990.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SOYBN2.639e-5991.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_BUXMI2.639e-5993.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_TOBAC3.447e-5990.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_PANGI3.447e-5992.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_NICTO3.447e-5990.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_NICSY3.447e-5990.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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