CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNP6 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.101e-40
Identity = 74/120 (61.67%), Postives = 98/120 (81.67%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            +F+L  Y+    FL+ISS++PIL+   S +L P  +GPE+ ++YESG+EP+G AW+QF +RYYMFALVFV+FDVETVFLYPWA++F+ LG+  F+EA IF+ IL+VGL YAWRKGALEWS
Sbjct:   14 VFVLNGYEYLLGFLLISSLVPILSLTASRLLRPGRRGPERRTTYESGMEPIGGAWIQFNVRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFVEALIFITILVVGLAYAWRKGALEWS 133          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNJB (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. GN=ndhC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.101e-40
Identity = 78/120 (65.00%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  Y+    FLI+ S++PILA   SA+LAP  +G  + S+YESG+EP G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  F+EA IF+ IL+VGLVYAWRKGALEWS
Sbjct:    1 MFVLSGYEYLLVFLIVCSLLPILALGASALLAPKRRGSLRRSTYESGMEPFGQAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFVEALIFIAILVVGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNE7 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus elongatus (strain PCC 7942) GN=ndhC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.101e-40
Identity = 74/120 (61.67%), Postives = 98/120 (81.67%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            +F+L  Y+    FL+ISS++PIL+   S +L P  +GPE+ ++YESG+EP+G AW+QF +RYYMFALVFV+FDVETVFLYPWA++F+ LG+  F+EA IF+ IL+VGL YAWRKGALEWS
Sbjct:   14 VFVLNGYEYLLGFLLISSLVPILSLTASRLLRPGRRGPERRTTYESGMEPIGGAWIQFNVRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFVEALIFITILVVGLAYAWRKGALEWS 133          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_HUPLU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Huperzia lucidula GN=ndhC PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.744e-40
Identity = 78/120 (65.00%), Postives = 95/120 (79.17%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFL+ KY+ FW FL+++S+IP +A  IS+  AP+ KGPEK +SYESGIEP+GDAW+QF+IRYYMFA VFV+ D ETV LYPWAM F+ LGVP   EA I + I IVG VYAWR+GA EWS
Sbjct:    1 MFLISKYNYFWLFLLLASLIPPVASPISSYSAPVGKGPEKFTSYESGIEPIGDAWIQFQIRYYMFASVFVISDAETVSLYPWAMCFNELGVPASAEASISVTIPIVGSVYAWRRGASEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNR3 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain RCC307) GN=ndhC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.113e-40
Identity = 75/120 (62.50%), Postives = 97/120 (80.83%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  YD F  FL+I++ +P+LA + +AVLAP ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA +F+ IL+V L YAWRKGALEWS
Sbjct:    1 MFVLPGYDAFLGFLLIAAAVPVLALITNAVLAPRSRQGERRLTYESGMEPVGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFIEALVFIAILVVALAYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNJA (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.113e-40
Identity = 76/120 (63.33%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  Y+    FLI+ +++P+LA   SA+LAP  +G  + S+YESG+EP G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  F+EA IF+ IL+VGLVYAWRKGALEWS
Sbjct:    1 MFVLSGYEYLLVFLIVCALLPVLALGASALLAPKRRGSLRRSTYESGMEPFGQAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFVEALIFIAILVVGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_NEPOL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Nephroselmis olivacea GN=ndhC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.113e-40
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            M +L  Y    AF +I+S+IP++A   S +L P   GPE+ ++YESGIEPMG+AW+QF IRYYMFALVFVVFDVET+FLYPWA++F  LG+  F E  IF+++L++GLVYAWRKGALEWS
Sbjct:    1 MMILEGYGSVLAFFVIASLIPVIALSASKLLRPRGGGPERRTTYESGIEPMGEAWIQFNIRYYMFALVFVVFDVETLFLYPWAVTFQRLGLSAFFEVLIFIIVLLIGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_CYAA5 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Cyanothece sp. (strain ATCC 51142) GN=ndhC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.113e-40
Identity = 77/120 (64.17%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  Y+    FL+  S+IPILA   S +L P   GPE+ ++YESG+EP+G AW+QF IRYYMFALVFVVFDVETVFLYPWA++F  LG+  F+EA IF+ IL+V LVYAWRKGALEWS
Sbjct:    1 MFVLNGYEYVLGFLLACSLIPILALTASKILRPSGGGPERRTTYESGMEPIGGAWIQFNIRYYMFALVFVVFDVETVFLYPWAVAFSRLGLLAFVEALIFIAILVVALVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ACAM1 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.113e-40
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF L  Y+    FL++ S++P LA   S VL P N+G  + ++YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LGV  FIEA IF+ ILIVGLVYAWRKGALEWS
Sbjct:    1 MFALSGYEYLLGFLLLCSLVPALALSASKVLRPSNQGAVRRTTYESGMEPVGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHKLGVLAFIEALIFIAILIVGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PAUCH (NAD(P)H-quinone oxidoreductase subunit 3, organellar chromatophore OS=Paulinella chromatophora GN=ndhC PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.043e-39
Identity = 74/120 (61.67%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  YD F  FL+I++ +P+LA L + +LAP ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA IF+ IL++ L YAWRKGALEWS
Sbjct:    1 MFVLSGYDAFLGFLLIATAVPVLALLTNKILAPKSRNGERELTYESGMEPVGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILVIALAYAWRKGALEWS 120          
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_SYNP62.101e-4061.67NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_SYNJB2.101e-4065.00NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_SYNE72.101e-4061.67NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_HUPLU2.744e-4065.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SYNR36.113e-4062.50NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_SYNJA6.113e-4063.33NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_NEPOL6.113e-4061.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CYAA56.113e-4064.17NAD(P)H-quinone oxidoreductase subunit 3 OS=Cyanot... [more]
NU3C_ACAM16.113e-4065.00NAD(P)H-quinone oxidoreductase subunit 3 OS=Acaryo... [more]
NU3C_PAUCH1.043e-3961.67NAD(P)H-quinone oxidoreductase subunit 3, organell... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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