CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROM3 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.779e-39
Identity = 76/122 (62.30%), Postives = 97/122 (79.51%), Query Frame = 1
Query:  169 LAMFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            L+MF L  YD F  FL++S+ +PILA + + +LAP ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA IF+ IL+V L YAWRKGALEWS
Sbjct:   13 LSMFALPGYDAFLGFLLVSAAVPILALVTNKLLAPRSRTGERELTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILLVALAYAWRKGALEWS 134          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROM2 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus (strain MIT 9215) GN=ndhC PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.034e-39
Identity = 73/120 (60.83%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL  Y+ F  FL+I++ +PILA + + ++AP  +  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F+ LG+  FIEA IF+ IL++ L YAWRKGALEWS
Sbjct:    1 MFLLSGYEYFLGFLLIAAAVPILALVTNLIVAPKGRNGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFIAILVIALAYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_MESVI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Mesostigma viride GN=ndhC PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.034e-39
Identity = 75/120 (62.50%), Postives = 93/120 (77.50%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  YD F  F I++ ++PILA   S ++ P   G EK  +YESGIEPMG+AW+QF IRYYMFAL+FV+FDVET+FLYPWA+ F  LG+  F+E  IF+ ILI+GLVYAWRKGALEWS
Sbjct:    1 MFILEGYDSFVVFFIVACLVPILALSGSKLIRPKLSGIEKKMTYESGIEPMGEAWVQFNIRYYMFALIFVIFDVETLFLYPWAIVFKDLGITAFLETLIFLSILIIGLVYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_GLOVI (NAD(P)H-quinone oxidoreductase subunit 3 OS=Gloeobacter violaceus GN=ndhC PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.034e-39
Identity = 73/120 (60.83%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  YD    FL++S+++P+LA  IS ++ P   G  + ++YESG++P GD+W+QF IRYYMFALVFVVFDVETVFLYPWA++F+ LG+  FIEA IF+ IL+V LVYAWRKGALEW+
Sbjct:    1 MFVLSGYDALLIFLLLSALVPVLALTISYLIRPKGSGAFRTTTYESGVDPRGDSWIQFNIRYYMFALVFVVFDVETVFLYPWAVAFNQLGLLAFIEALIFIAILVVALVYAWRKGALEWT 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNS9 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain CC9902) GN=ndhC PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.962e-39
Identity = 74/120 (61.67%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF L  YD F  FL+I++ +P+LA + + +LAP ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F+ LG+  FIEA IF+ IL+V L YAWRKGALEWS
Sbjct:    1 MFALPGYDAFLGFLLIAAAVPVLALVTNKLLAPKSRAGERQLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFIAILLVALAYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROM0 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus (strain MIT 9301) GN=ndhC PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.962e-39
Identity = 72/120 (60.00%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL  Y+ F  FL+I++ +P+LA + + ++AP  +  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F+ LG+  FIEA IF+ IL++ L YAWRKGALEWS
Sbjct:    1 MFLLTGYEYFLGFLLIAAAVPVLALVTNLIVAPKGRAGERRLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFIAILVIALAYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNPW (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain WH7803) GN=ndhC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.175e-39
Identity = 74/120 (61.67%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  YD F  FL+I++ +P+LA + + +LAP ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA IF+ IL+V L YAWRKGALEWS
Sbjct:    1 MFVLPGYDAFLGFLLIAAAVPVLALVTNKLLAPRSQDGERQLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILVVALAYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROMM (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.175e-39
Identity = 76/120 (63.33%), Postives = 95/120 (79.17%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF L  YD F  FL+IS+ +PILA + + +LAP ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA IF+ IL+V L YAWRKGALEWS
Sbjct:    1 MFALPGYDAFLGFLLISAAVPILALVTNKLLAPRSRTGERELTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILLVALAYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROM9 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.175e-39
Identity = 73/120 (60.83%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL  Y+ F  FL+I++ +PILA + + ++AP  +  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F+ LG+  FIEA IF+ IL++ L YAWRKGALEWS
Sbjct:    1 MFLLTGYEYFLGFLLIAAAVPILALVTNLIVAPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFIAILVIALAYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROMT (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus (strain NATL2A) GN=ndhC PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.758e-39
Identity = 74/120 (61.67%), Postives = 93/120 (77.50%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF L  Y+ F  FL+IS  +PILA   + ++AP +K  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA +F+ IL+V L YAWRKGALEWS
Sbjct:    1 MFSLQGYEYFLGFLLISGAVPILALTTNKLIAPKSKAGERQLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHKLGLLAFIEALVFITILVVALAYAWRKGALEWS 120          
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_PROM31.779e-3962.30NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]
NU3C_PROM23.034e-3960.83NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]
NU3C_MESVI3.034e-3962.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_GLOVI3.034e-3960.83NAD(P)H-quinone oxidoreductase subunit 3 OS=Gloeob... [more]
NU3C_SYNS93.962e-3961.67NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_PROM03.962e-3960.00NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]
NU3C_SYNPW5.175e-3961.67NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_PROMM5.175e-3963.33NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]
NU3C_PROM95.175e-3960.83NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]
NU3C_PROMT6.758e-3961.67NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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