CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROMS (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus (strain AS9601) GN=ndhC PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.758e-39
Identity = 72/120 (60.00%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLL  Y+ F  FL+I++ +P+LA + + ++AP  +  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F+ LG+  FIEA IF+ IL++ L YAWRKGALEWS
Sbjct:    1 MFLLTGYEYFLGFLLIAAAVPVLALVTNLIVAPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFIAILVIALAYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROM4 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus (strain MIT 9211) GN=ndhC PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.758e-39
Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF L  YD F  FL+IS+ +P+LA + + +L+P ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA IF+ ILIV L YAWRKGALEWS
Sbjct:    1 MFSLQGYDAFLGFLLISAAVPVLALVTNKLLSPKSQTGERELTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHKLGLLAFIEALIFIAILIVALAYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROM1 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus (strain NATL1A) GN=ndhC PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.758e-39
Identity = 74/120 (61.67%), Postives = 93/120 (77.50%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF L  Y+ F  FL+IS  +PILA   + ++AP +K  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA +F+ IL+V L YAWRKGALEWS
Sbjct:    1 MFSLQGYEYFLGFLLISGAVPILALTTNKLIAPKSKAGERQLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHKLGLLAFIEALVFITILVVALAYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNSC (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain CC9605) GN=ndhC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.827e-39
Identity = 73/120 (60.83%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF L  YD F  FL+I++ +P+LA + + ++AP ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F+ LG+  FIEA IF+ IL+V L YAWRKGALEWS
Sbjct:    1 MFALPGYDAFLGFLLIAAAVPVLALVTNKLVAPKSRAGERQLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFIAILLVALAYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNPX (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain WH8102) GN=ndhC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.153e-38
Identity = 75/120 (62.50%), Postives = 93/120 (77.50%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF L  YD F  FL+I++ +P LA + +  LAP ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LGV  FIEA IF+ IL+V L YAWRKGALEWS
Sbjct:    1 MFALPGYDAFLGFLLIAAAVPALALITNKFLAPKSRAGERQLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGVLAFIEALIFITILLVALAYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SYNS3 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Synechococcus sp. (strain CC9311) GN=ndhC PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.506e-38
Identity = 73/120 (60.83%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  YD F  FL+I++ +P+LA + + +LAP ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA +F+ IL+V L YAWRKGALEWS
Sbjct:   16 MFVLPGYDAFLGFLLIAAAVPVLALVTNKLLAPRSQTGERELTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFIEALVFITILLVALAYAWRKGALEWS 135
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_NOSP7 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.506e-38
Identity = 75/120 (62.50%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  Y+    F II S++P LA   S +L P    PE+ ++YESG+EP+G AW+QF IRYYMFALVFVVFDVETVFLYPWA++F  LG+  FIEA +F+ IL+V LVYAWRKGALEWS
Sbjct:    1 MFVLSGYEYLLGFFIICSLVPALALSASKLLRPSGYAPERRTTYESGMEPIGGAWIQFNIRYYMFALVFVVFDVETVFLYPWAVAFHRLGLLAFIEALVFIAILVVALVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROM5 (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus (strain MIT 9515) GN=ndhC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.966e-38
Identity = 73/120 (60.83%), Postives = 95/120 (79.17%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF L  Y+ F  FLII++ +PILA + + ++AP  +  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F+ LG+  FIEA IF+ IL++ L YAWRKGALEWS
Sbjct:    1 MFSLPGYEYFLGFLIIAAAVPILALVTNLIVAPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFIAILVIALAYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ANAVT (NAD(P)H-quinone oxidoreductase subunit 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.568e-38
Identity = 76/120 (63.33%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  Y+    FLII S++P LA   S +L P     E+ ++YESG+EP+G AW+QF IRYYMFALVFVVFDVETVFLYPWA++F  LG+  FIEA IF+ IL+V LVYAWRKGALEWS
Sbjct:    1 MFVLSGYEYLLGFLIICSLVPALALSASKLLRPTGNSLERRTTYESGMEPIGGAWIQFNIRYYMFALVFVVFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILVVALVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ANASP (NAD(P)H-quinone oxidoreductase subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=ndhC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.568e-38
Identity = 76/120 (63.33%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF+L  Y+    FLII S++P LA   S +L P     E+ ++YESG+EP+G AW+QF IRYYMFALVFVVFDVETVFLYPWA++F  LG+  FIEA IF+ IL+V LVYAWRKGALEWS
Sbjct:    1 MFVLSGYEYLLGFLIICSLVPALALSASKLLRPTGNSLERRTTYESGMEPIGGAWIQFNIRYYMFALVFVVFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILVVALVYAWRKGALEWS 120
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_PROMS6.758e-3960.00NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]
NU3C_PROM46.758e-3962.50NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]
NU3C_PROM16.758e-3961.67NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]
NU3C_SYNSC8.827e-3960.83NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_SYNPX1.153e-3862.50NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_SYNS31.506e-3860.83NAD(P)H-quinone oxidoreductase subunit 3 OS=Synech... [more]
NU3C_NOSP71.506e-3862.50NAD(P)H-quinone oxidoreductase subunit 3 OS=Nostoc... [more]
NU3C_PROM51.966e-3860.83NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]
NU3C_ANAVT2.568e-3863.33NAD(P)H-quinone oxidoreductase subunit 3 OS=Anabae... [more]
NU3C_ANASP2.568e-3863.33NAD(P)H-quinone oxidoreductase subunit 3 OS=Anabae... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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