CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_THEEB (NAD(P)H-quinone oxidoreductase subunit 3 OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhC PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.381e-38
Identity = 75/130 (57.69%), Postives = 99/130 (76.15%), Query Frame = 1
Query:  145 SIFHIHRSLAMFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            +I  +  +  +F+L  Y+ F  FLII S++P+LA   SA+L P +    +L++YESG+EP+G AW+QF +RYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA IF+ IL+V LVYAWRK ALEWS
Sbjct:    3 AIPRLRDTATVFVLSGYEYFLGFLIICSLVPVLALAASALLRPKSGRMIRLTTYESGMEPIGGAWIQFNVRYYMFALVFVIFDVETVFLYPWAVAFHQLGLLAFIEALIFIAILVVALVYAWRKRALEWS 132          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROMP (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndhC PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.381e-38
Identity = 72/120 (60.00%), Postives = 95/120 (79.17%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF L  Y+ F  FLII++ +PILA + + +++P  +  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F+ LG+  FIEA IF+ IL++ L YAWRKGALEWS
Sbjct:    1 MFSLPGYEYFLGFLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFITILVIALAYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PROMA (NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochlorococcus marinus GN=ndhC PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.721e-38
Identity = 74/120 (61.67%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MF L  YD F  FL+IS+ +P LA + + +++P ++  E+  +YESG+EP+G AW+QF IRYYMFALVFV+FDVETVFLYPWA++F  LG+  FIEA IF+ ILIV L YAWRKGALEWS
Sbjct:    1 MFTLPGYDAFLGFLLISAAVPALALVTNKLISPKSQPGERELTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHKLGLLAFIEALIFISILIVALAYAWRKGALEWS 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_HERA2 (NADH-quinone oxidoreductase subunit A OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=nuoA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.155e-30
Identity = 57/117 (48.72%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  181 LLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            +L  Y     F + +   P+L  ++SA L P    P KLS+YE G+E +GD W+QF+++YY++AL FV+FD+ETVFLYPWA+++  LG+    E  +F+ IL +GLVYAW+KGALEW
Sbjct:    1 MLTNYAFIGIFALAAITFPLLPLVLSAFLRPNRPTPVKLSTYECGLEAIGDIWVQFKVQYYLYALAFVIFDIETVFLYPWAVAYGQLGLFALFEMVVFLAILTIGLVYAWKKGALEW 117          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_BACC1 (NADH-quinone oxidoreductase subunit A OS=Bacillus cereus (strain ATCC 10987) GN=nuoA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.281e-29
Identity = 56/113 (49.56%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  193 YDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            Y I   FL++  ++P++A  +  +L P      K ++YESGIEP  DA ++F  RYY+FAL+FV+FDVET+FLYPWA+++D LG+   IE FIF+++L+VGL YAW+K  L+W
Sbjct:    9 YMIVLIFLLLGILLPVVALTLGRMLRPSKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMFIFVVMLLVGLAYAWKKKVLQW 121          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_BACWK (NADH-quinone oxidoreductase subunit A OS=Bacillus weihenstephanensis (strain KBAB4) GN=nuoA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.367e-28
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  193 YDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            Y I   FL++  ++P++A  +  +L P      K ++YESGIEP  DA ++F  RYY+FAL+FV+FDVET+FLYPWA+++D LG+   IE  IF+++L+VGL YAW+K  L+W
Sbjct:    9 YMIVLIFLLLGILLPVVALTLGKMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_BACCR (NADH-quinone oxidoreductase subunit A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=nuoA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.367e-28
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  193 YDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            Y I   FL++  ++P++A  +  +L P      K ++YESGIEP  DA ++F  RYY+FAL+FV+FDVET+FLYPWA+++D LG+   IE  IF+++L+VGL YAW+K  L+W
Sbjct:    9 YMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_BACHK (NADH-quinone oxidoreductase subunit A OS=Bacillus thuringiensis subsp. konkukian GN=nuoA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  193 YDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            Y I   FL++  ++P++A  +  +L P      K ++YESGIEP  DA ++F  RYY+FAL+FV+FDVET+FLYPWA+++D LG+   IE  IF+++L+VGL YAW+K  L+W
Sbjct:    9 YMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDDLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_BACCZ (NADH-quinone oxidoreductase subunit A OS=Bacillus cereus (strain ZK / E33L) GN=nuoA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  193 YDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            Y I   FL++  ++P++A  +  +L P      K ++YESGIEP  DA ++F  RYY+FAL+FV+FDVET+FLYPWA+++D LG+   IE  IF+++L+VGL YAW+K  L+W
Sbjct:    9 YMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDNLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_BACAN (NADH-quinone oxidoreductase subunit A OS=Bacillus anthracis GN=nuoA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  193 YDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            Y I   FL++  ++P++A  +  +L P      K ++YESGIEP  DA ++F  RYY+FAL+FV+FDVET+FLYPWA+++D LG+   IE  IF+++L+VGL YAW+K  L+W
Sbjct:    9 YMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDNLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121          
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_THEEB4.381e-3857.69NAD(P)H-quinone oxidoreductase subunit 3 OS=Thermo... [more]
NU3C_PROMP4.381e-3860.00NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]
NU3C_PROMA5.721e-3861.67NAD(P)H-quinone oxidoreductase subunit 3 OS=Prochl... [more]
NUOA_HERA21.155e-3048.72NADH-quinone oxidoreductase subunit A OS=Herpetosi... [more]
NUOA_BACC18.281e-2949.56NADH-quinone oxidoreductase subunit A OS=Bacillus ... [more]
NUOA_BACWK5.367e-2848.67NADH-quinone oxidoreductase subunit A OS=Bacillus ... [more]
NUOA_BACCR5.367e-2848.67NADH-quinone oxidoreductase subunit A OS=Bacillus ... [more]
NUOA_BACHK7.010e-2848.67NADH-quinone oxidoreductase subunit A OS=Bacillus ... [more]
NUOA_BACCZ7.010e-2848.67NADH-quinone oxidoreductase subunit A OS=Bacillus ... [more]
NUOA_BACAN7.010e-2848.67NADH-quinone oxidoreductase subunit A OS=Bacillus ... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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