CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_HELMI (NADH-quinone oxidoreductase subunit A OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=nuoA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.562e-27
Identity = 56/107 (52.34%), Postives = 72/107 (67.29%), Query Frame = 1
Query:  211 FLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            FL    +IP LAF +S +L        K   YE G+E +GD W+QF+  Y+++ALVFV FDVETVFLYPWA+ F  LG    +E FIF+ IL+VG  YAW++GALEW
Sbjct:   11 FLAAGLIIPFLAFAVSRLLQTRKNSLVKGEPYECGMETIGDTWIQFKSNYFLYALVFVAFDVETVFLYPWAVKFQQLGTFAIVEMFIFITILVVGFWYAWKEGALEW 117          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_CHLAA (NADH-quinone oxidoreductase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=nuoA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.664e-27
Identity = 52/117 (44.44%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  181 LLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            +L  Y +   FL+ +   P++  +++  L P    P K S+YE G+E +GD  +QF+++YY++AL FV+FD+E +FLYPWA++F+ +G+   I A IF+L+L  GL+Y WRKGALEW
Sbjct:    1 MLANYALIGIFLVAAISFPLIPLVLAFFLRPKRPTPLKTSTYECGLEAIGDVHVQFKVQYYLYALAFVIFDIEVIFLYPWAVAFNAVGLYGLIAATIFLLMLFAGLLYEWRKGALEW 117          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_BACCN (NADH-quinone oxidoreductase subunit A OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=nuoA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.479e-27
Identity = 54/113 (47.79%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  193 YDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            Y I   FL++  ++P++A  +  +L P      K ++YESGIEP  DA ++F  RYY+FAL+FV+FDVET+FLYPWA+++D LG+   IE  IF+ +L++GL YAW+K  L+W
Sbjct:    9 YMIVGIFLLLGILLPVVALTLGKLLRPHKPSEAKNTTYESGIEPYHDANVRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMLIFVAMLLIGLAYAWKKKVLQW 121          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_ROSS1 (NADH-quinone oxidoreductase subunit A OS=Roseiflexus sp. (strain RS-1) GN=nuoA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  181 LLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            +L  Y     F I + + PI+    +  L P    P KL +YE G+E +GD  +QF+I+YY++AL FV+FD+E VFLYPWA+++  LG+  FI   IF++ILI GLVY W+KGALEW
Sbjct:    1 MLANYAFIGVFFIGAIIFPIIPLAAAYFLGPKRPTPIKLDTYECGLEAIGDIRVQFKIQYYLYALAFVIFDIEVVFLYPWAVAYGQLGLFAFIAMAIFLIILIGGLVYEWKKGALEW 117          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_DESHY (NADH-quinone oxidoreductase subunit A OS=Desulfitobacterium hafniense (strain Y51) GN=nuoA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  214 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            L+++  I ++  L+  +LAP    PEKL+ YE G + +G  WL F+  Y+++ALVF  FDVETVFL+PWA+SF  LG   FIE F+F++IL+VG  YAW++GALEW
Sbjct:   12 LVVAIAINLIMMLMPKLLAPKKPVPEKLTPYEGGNQTIGRTWLGFKSNYFLYALVFTAFDVETVFLFPWALSFRQLGTFAFIEMFVFIVILLVGFWYAWKEGALEW 117          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_CLOB8 (NADH-quinone oxidoreductase subunit A OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=nuoA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.727e-26
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  181 LLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            ++  Y I   FLI S +  ++  L ++++ P     EKLS+YE G+E  G  W++F++ Y+M+ LVF++FDVETVFL PWA+ F  LG+    E  IF+ ILI+GL YAW++GALEW
Sbjct:    1 MIQDYLIIGIFLIASFIFGMVVLLTASLVRPKKPNKEKLSTYECGVETTGSTWIRFKVSYFMYGLVFLLFDVETVFLLPWAVKFKSLGLFALFEMVIFIGILIIGLWYAWKEGALEW 117          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_CARHZ (NADH-quinone oxidoreductase subunit A OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=nuoA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.255e-26
Identity = 52/107 (48.60%), Postives = 79/107 (73.83%), Query Frame = 1
Query:  211 FLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            F +    + I+  +++ +L+P +K   K  +YE G+E +G  W+QF+  Y+M+ALVFV+FDVET+FLYPWA+ F+VLG+  F+E  IF+ IL++GL YAW++GALEW
Sbjct:   11 FFLTGFFLSIIILVLNYLLSPKSKSLIKRETYECGLETIGPTWVQFKGNYFMYALVFVLFDVETIFLYPWAVRFNVLGLFAFVEMVIFIGILVLGLWYAWKEGALEW 117          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_CHLPB (NADH-quinone oxidoreductase subunit A OS=Chlorobium phaeobacteroides (strain BS1) GN=nuoA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.561e-26
Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  184 LYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            L  +   + FL++  +  +  +L + +L P    PEKL+ YE G E +G AW++F IR+Y+ AL+F++FDVE VFL+PWA  F  LG    IEA +F  IL++GLVYAW KG L+W
Sbjct:    5 LSDFGTVFVFLLLGIIFVVGGYLTARLLRPSRPNPEKLAIYECGEEAVGSAWVKFNIRFYVVALIFIIFDVEVVFLFPWATVFKQLGEFALIEALVFAGILVIGLVYAWVKGDLDW 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_ROSCS (NADH-quinone oxidoreductase subunit A OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=nuoA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.119e-25
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  181 LLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            +L  Y     F I + + P++  + +  L P    P KL +YE G+E +GD  +QF+I+YY++AL FV+FD+E VFLYPWA+++  +G+   I   IF++IL+ GLVY W+KGALEW
Sbjct:    1 MLADYAFIGVFFIGAVIFPLVPLVAAYFLGPKRPTPIKLDTYECGLEAVGDIRVQFKIQYYLYALAFVIFDIEVVFLYPWAVAYGQIGLFALIAMAIFLVILVGGLVYEWKKGALEW 117          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_GEOTN (NADH-quinone oxidoreductase subunit A OS=Geobacillus thermodenitrificans (strain NG80-2) GN=nuoA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.119e-25
Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 1
Query:  193 YDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            Y I + FL +  ++PI A  I   L P      K ++YESG  P  D+ +QF++RYY+FAL+FV+FDVETVFLYPWA+ +D LG+   +E  IF+++L +GL+YAW+K  L W
Sbjct:    9 YLIVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVYDQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRW 121          
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NUOA_HELMI1.562e-2752.34NADH-quinone oxidoreductase subunit A OS=Heliobact... [more]
NUOA_CHLAA2.664e-2744.44NADH-quinone oxidoreductase subunit A OS=Chlorofle... [more]
NUOA_BACCN3.479e-2747.79NADH-quinone oxidoreductase subunit A OS=Bacillus ... [more]
NUOA_ROSS14.544e-2747.86NADH-quinone oxidoreductase subunit A OS=Roseiflex... [more]
NUOA_DESHY4.544e-2750.94NADH-quinone oxidoreductase subunit A OS=Desulfito... [more]
NUOA_CLOB81.727e-2646.15NADH-quinone oxidoreductase subunit A OS=Clostridi... [more]
NUOA_CARHZ2.255e-2648.60NADH-quinone oxidoreductase subunit A OS=Carboxydo... [more]
NUOA_CHLPB6.561e-2645.69NADH-quinone oxidoreductase subunit A OS=Chlorobiu... [more]
NUOA_ROSCS1.119e-2544.44NADH-quinone oxidoreductase subunit A OS=Roseiflex... [more]
NUOA_GEOTN1.119e-2547.79NADH-quinone oxidoreductase subunit A OS=Geobacill... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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