CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_CHLTE (NADH-quinone oxidoreductase subunit A OS=Chlorobium tepidum GN=nuoA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  205 WAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            + FL++  V  +  +L + +L P    PEK S+YE G   +G AW++F IR+Y+ AL+F++FDVE VFLYPWA  F  LG    +E  IF+ IL++GLVYAW KG L+W
Sbjct:   12 FVFLVLGIVFVVGGYLTARMLRPSRPNPEKNSTYECGEHAVGSAWVKFNIRFYVVALIFIIFDVEVVFLYPWATVFKQLGAFALVEVLIFVGILVLGLVYAWVKGDLDW 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_CHLCH (NADH-quinone oxidoreductase subunit A OS=Chlorobium chlorochromatii (strain CaD3) GN=nuoA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.462e-25
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  184 LYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            L ++   + FL++  +  +  +L S +L P    P+K S+YE G E +G AW++F IR+Y+ AL+F++FDVE VFLYPWA  F  LG    IE  +F  ILI+GL YAW KG L+W
Sbjct:    5 LTQFGSVFVFLLLGVIFVVGGYLTSRLLRPSRPNPQKNSTYECGEEAIGSAWVKFNIRFYVVALIFIIFDVEVVFLYPWATVFKPLGTFALIEVLVFAGILILGLAYAWVKGDLDW 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_MOOTA (NADH-quinone oxidoreductase subunit A OS=Moorella thermoacetica (strain ATCC 39073) GN=nuoA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.909e-25
Identity = 54/119 (45.38%), Postives = 82/119 (68.91%), Query Frame = 1
Query:  181 LLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPE--KLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            +L +Y I   FL+  +   + A   + +L P  K PE  KL++YE G++  G  W+QF++ Y+++ALVF++FDVETVFLYPWA+ F  LG+  F E  +F+ IL++GL YAW++GAL+W
Sbjct:    2 VLQQYGIIAVFLVGGAATAVAALATNWLLRP-KKPPEGDKLAAYECGLKTQGPTWIQFKVSYFLYALVFLLFDVETVFLYPWAVRFQALGLFAFAEMIVFIGILVLGLWYAWKEGALKW 119          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_GEOKA (NADH-quinone oxidoreductase subunit A OS=Geobacillus kaustophilus GN=nuoA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.909e-25
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  193 YDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            Y I + FL +  ++PI A      L P      K ++YESG  P  D+ +QF++RYY+FAL+FV+FD+ETVFLYPWA+ +D LG+   +E  IF+++L +GL+YAW+K  L W
Sbjct:    9 YLIIFVFLCLGVLLPIGALTAGRWLRPHVPSDAKATTYESGNNPFHDSRVQFQVRYYLFALLFVIFDIETVFLYPWAVVYDQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRW 121          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_CHLP8 (NADH-quinone oxidoreductase subunit A OS=Chlorobaculum parvum (strain NCIB 8327) GN=nuoA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.909e-25
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  184 LYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            L  +   + FL++  V  +  +L + +L P     EKLS+YE G   +G AW++F IR+Y+ AL+F++FDVE VFLYPWA  F  LG+   +E  IF  IL++GLVYAW KG L+W
Sbjct:    5 LSNFGTVFVFLVLGIVFVVGGYLTARMLRPSRPNEEKLSTYECGEPAVGSAWVKFNIRFYVVALIFIIFDVEVVFLYPWATVFKQLGMFALVEVLIFAGILVLGLVYAWVKGDLDW 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_PROA2 (NADH-quinone oxidoreductase subunit A OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=nuoA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.256e-25
Identity = 52/116 (44.83%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  184 LYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            L  +   + FL++ +V  +  +L + +L P    PEKL+ YE G + +G +W++F IR+Y+ AL+F++FDVE VFL+PWA  F  LG    IEA +F  ILI+GL YAW KG L+W
Sbjct:    5 LSDFGAVFVFLLLGTVFVVGGYLTARLLRPSRPNPEKLAVYECGEDAVGTSWVKFNIRFYVVALIFIIFDVEVVFLFPWATVFKQLGEFALIEALVFAGILIIGLAYAWVKGDLDW 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_CHLPD (NADH-quinone oxidoreductase subunit A OS=Chlorobium phaeobacteroides (strain DSM 266) GN=nuoA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.256e-25
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  205 WAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            +AFL +  V     +L + +L P    P K S+YE G E +G AW++F IR+Y+ AL+F++FDVE VFLYPWA  F  LGV   +E  +F  ILI+GLVYAW KG L+W
Sbjct:   12 FAFLALGIVFVAGGYLTARMLRPSRPNPAKNSTYECGEEAVGSAWVKFNIRFYVVALIFIIFDVEVVFLYPWATVFKSLGVFALVEVLVFAGILILGLVYAWVKGDLDW 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA2_CHLT3 (NADH-quinone oxidoreductase subunit A 2 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=nuoA2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.474e-25
Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 1
Query:  178 FLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            + + ++   + FL+   V  I  ++ S +L P     EKL+SYE G E +G AW+QF IR+Y+ AL+F++FDVE +FL+PWA  F  LG     EA IF+ IL +GLVYAW KG L+W
Sbjct:    3 YTISEFGKVFLFLLFGVVFVIGGYVSSRMLRPHRPNDEKLTSYECGEEAVGSAWVQFNIRFYVVALIFIIFDVEVLFLFPWATVFKQLGGFALFEAVIFVTILTLGLVYAWVKGDLDW 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_PELPB (NADH-quinone oxidoreductase subunit A OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=nuoA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.616e-24
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1
Query:  205 WAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            +AFL +  V     +L + +L P    P K S+YE G E +G AW++F IR+Y+ AL+F++FDVE VFLYPWA  F  LG    IEA +F  IL++GL YAW KG L+W
Sbjct:   12 FAFLALGVVFVAGGYLTARMLRPSRPNPAKNSTYECGEEAVGSAWVKFNIRFYVVALIFIIFDVEVVFLYPWATVFKQLGEFALIEALVFAGILVLGLAYAWVKGDLDW 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_CHLL2 (NADH-quinone oxidoreductase subunit A OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=nuoA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.111e-24
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  205 WAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            + FL +  V     +L + +L P    PEK S+YE G E +G AW++F IR+Y+ AL+F++FDVE VFLYPWA  F  LG     EA +F  ILI+GL YAW KG L+W
Sbjct:   12 FVFLALGIVFVAGGYLTARMLRPSRPNPEKNSTYECGEEAVGSAWVKFNIRFYVVALIFIIFDVEVVFLYPWATVFKQLGEFALFEALVFAGILILGLAYAWVKGDLDW 120          
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NUOA_CHLTE1.462e-2547.71NADH-quinone oxidoreductase subunit A OS=Chlorobiu... [more]
NUOA_CHLCH1.462e-2545.69NADH-quinone oxidoreductase subunit A OS=Chlorobiu... [more]
NUOA_MOOTA1.909e-2545.38NADH-quinone oxidoreductase subunit A OS=Moorella ... [more]
NUOA_GEOKA1.909e-2546.02NADH-quinone oxidoreductase subunit A OS=Geobacill... [more]
NUOA_CHLP81.909e-2545.69NADH-quinone oxidoreductase subunit A OS=Chlorobac... [more]
NUOA_PROA23.256e-2544.83NADH-quinone oxidoreductase subunit A OS=Prostheco... [more]
NUOA_CHLPD3.256e-2549.54NADH-quinone oxidoreductase subunit A OS=Chlorobiu... [more]
NUOA2_CHLT39.474e-2545.76NADH-quinone oxidoreductase subunit A 2 OS=Chloroh... [more]
NUOA_PELPB1.616e-2448.62NADH-quinone oxidoreductase subunit A OS=Pelodicty... [more]
NUOA_CHLL22.111e-2448.62NADH-quinone oxidoreductase subunit A OS=Chlorobiu... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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