CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_ACIF5 (NADH-quinone oxidoreductase subunit A OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=nuoA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.757e-24
Identity = 47/107 (43.93%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  211 FLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            FL+++ V+ +   L+ + L P     EKLS YE G E   DA ++F +RYY+ A++F++FD+E  FL+PWA+ FD +G+  F+   +F+ IL+VG +Y W+KGALEW
Sbjct:   11 FLLVALVVGVAPLLMGSSLGPHRPDSEKLSPYECGFEAFEDARMKFDVRYYLVAILFILFDLEIAFLFPWAVVFDQIGMTGFLAMMLFLAILVVGFIYEWKKGALEW 117          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_PROVI (NADH-quinone oxidoreductase subunit A OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=nuoA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.702e-24
Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = 1
Query:  184 LYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            L ++   + F ++  V     +L + +L P    P K S+YE G E +G AW++F IR+Y+ AL+F++FDVE VFL+PWA  F  LG    +EA +F  ILI+GLVYAW KG L+W
Sbjct:    5 LSEFGNVFVFFLLGVVFVAGGYLTARMLRPSRPNPVKTSTYECGEEAVGSAWVKFNIRFYVVALIFIIFDVEVVFLFPWATVFRQLGSFALVEALVFAGILILGLVYAWVKGDLDW 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_PELLD (NADH-quinone oxidoreductase subunit A OS=Pelodictyon luteolum (strain DSM 273) GN=nuoA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.141e-24
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  205 WAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            + FL++  V     +L + +L P    P K S+YE G E +G +W++F IR+Y+ AL+F++FDVE VFL+PWA  F  LG    IEA +F  ILI+GLVYAW KG L+W
Sbjct:   12 FVFLLLGVVFVAGGYLTARMLRPSRPNPVKNSTYECGEEAVGSSWVKFNIRFYVVALIFIIFDVEVVFLFPWATVFRQLGSFALIEALVFAGILILGLVYAWVKGDLDW 120          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_DESRM (NADH-quinone oxidoreductase subunit A OS=Desulfotomaculum reducens (strain MI-1) GN=nuoA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.334e-23
Identity = 47/107 (43.93%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  211 FLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            F+++  V      L S ++ P +K   KL +YE G+   G  W++F+ +Y+ +AL+FV+FDVE ++LYPWA+SF  LG+   I+ F+F+ IL++GL YAW++GALEW
Sbjct:   10 FIVVGIVFGAGGMLTSFLIHPRSKNKFKLETYECGLPTEGATWVRFKTQYFTYALMFVIFDVEVIYLYPWAVSFVDLGLAGLIKMFLFIFILVLGLWYAWKEGALEW 116          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NQO7_PARDE (NADH-quinone oxidoreductase subunit 7 OS=Paracoccus denitrificans GN=nqo7 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.334e-23
Identity = 49/119 (41.18%), Postives = 77/119 (64.71%), Query Frame = 1
Query:  178 FLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            +LL +Y     FL ++S + I+  L +AV+A  N  PEK+S+YE G     DA ++F +R+Y+ +++F++FD+E  FL+PWA+SF  L    F    +F+ +L VG  Y W+KGALEW+
Sbjct:    3 YLLQEYLPILVFLGMASALAIVLILAAAVIAVRNPDPEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEVAFLFPWAVSFASLSDVAFWGLMVFLAVLTVGFAYEWKKGALEWA 121          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_PELUB (NADH-quinone oxidoreductase subunit A OS=Pelagibacter ubique GN=nuoA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 46/107 (42.99%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  211 FLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            FLII+  +     +++ +L+P +  PEKLS+YE G EP  D+ ++F +R+Y+ A++F++FD+E  FL+PWA+S   +G   F    IF+ IL VG +Y W+KGAL+W
Sbjct:   15 FLIIALGLSCAFVVVNLILSPKHPDPEKLSAYECGFEPFEDSRMEFDVRFYLVAILFIIFDLEIAFLFPWAISLGNIGGLGFTSMMIFLFILTVGFIYEWKKGALDW 121          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_RALEJ (NADH-quinone oxidoreductase subunit A OS=Ralstonia eutropha (strain JMP134) GN=nuoA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.868e-23
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  211 FLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            F+I   V+ I    I  +L P    P KLS YE G E   DA ++F +RYY+ A++F++FD+ET FL+PW ++   +G P FI   +F+L  IVG VY W+KGAL+W
Sbjct:   12 FIIFGVVLGIALMSIGRILGPNKPDPAKLSPYECGFEAFEDARMKFDVRYYLIAILFILFDLETAFLFPWGVALREIGWPGFIAMGVFLLEFIVGFVYIWKKGALDW 118          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_BACFR (NADH-quinone oxidoreductase subunit A OS=Bacteroides fragilis GN=nuoA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.158e-22
Identity = 47/111 (42.34%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  214 LIISSVIPILAFL-----ISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            L++  ++  +AF+     +S  ++P +   +K  +YE GI   G +W+QFR+ YY+FA++F++FDVETVFL+PWA+    LG    I    F+++L++GL YAW+KGALEW
Sbjct:    5 LLVVVLLTAIAFVGVVIALSNAISPRSYNAQKFEAYECGIPTRGKSWMQFRVGYYLFAILFLMFDVETVFLFPWAVIARDLGPQGLISILFFLVVLVLGLAYAWKKGALEW 115          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_BACFN (NADH-quinone oxidoreductase subunit A OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=nuoA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.158e-22
Identity = 47/111 (42.34%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  214 LIISSVIPILAFL-----ISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            L++  ++  +AF+     +S  ++P +   +K  +YE GI   G +W+QFR+ YY+FA++F++FDVETVFL+PWA+    LG    I    F+++L++GL YAW+KGALEW
Sbjct:    5 LLVVVLLTAIAFVGVVIALSNAISPRSYNAQKFEAYECGIPTRGKSWMQFRVGYYLFAILFLMFDVETVFLFPWAVIARDLGPQGLISILFFLVVLVLGLAYAWKKGALEW 115          
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NUOA_RALSO (NADH-quinone oxidoreductase subunit A OS=Ralstonia solanacearum GN=nuoA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.513e-22
Identity = 46/107 (42.99%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  211 FLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 531
            F+II   + +    I  +L P N  P+KLS YE G E   DA ++F +RYY+ A++F++FD+ET FL+PW ++   +G P F    +F+L  +VG VY W+KGAL+W
Sbjct:   12 FIIIGVGLGLALMTIGRILGPNNPDPDKLSPYECGFEAFEDARMKFDVRYYLIAILFILFDLETAFLFPWGVALRDIGWPGFFAMGVFLLEFLVGFVYIWKKGALDW 118          
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NUOA_ACIF52.757e-2443.93NADH-quinone oxidoreductase subunit A OS=Acidithio... [more]
NUOA_PROVI4.702e-2444.83NADH-quinone oxidoreductase subunit A OS=Prostheco... [more]
NUOA_PELLD6.141e-2447.71NADH-quinone oxidoreductase subunit A OS=Pelodicty... [more]
NUOA_DESRM2.334e-2343.93NADH-quinone oxidoreductase subunit A OS=Desulfoto... [more]
NQO7_PARDE2.334e-2341.18NADH-quinone oxidoreductase subunit 7 OS=Paracoccu... [more]
NUOA_PELUB5.199e-2342.99NADH-quinone oxidoreductase subunit A OS=Pelagibac... [more]
NUOA_RALEJ8.868e-2344.86NADH-quinone oxidoreductase subunit A OS=Ralstonia... [more]
NUOA_BACFR1.158e-2242.34NADH-quinone oxidoreductase subunit A OS=Bacteroid... [more]
NUOA_BACFN1.158e-2242.34NADH-quinone oxidoreductase subunit A OS=Bacteroid... [more]
NUOA_RALSO1.513e-2242.99NADH-quinone oxidoreductase subunit A OS=Ralstonia... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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