CX287253

Overview
NameCX287253
Unique NameCX287253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_PHAVU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Phaseolus vulgaris GN=ndhC PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.502e-59
Identity = 108/120 (90.00%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS+IPILAFLIS +LAPI+KGPEKLSSYESGIEP+GDAWLQFRIRYYMFAL+FVVFDVETVFLYPWAMSFDVLGV VF+EAF+F+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSLIPILAFLISGILAPISKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALIFVVFDVETVFLYPWAMSFDVLGVSVFLEAFLFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_JASNU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Jasminum nudiflorum GN=ndhC PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.502e-59
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS+IPILAF IS +LAPI KGPEKLSSYESGIEPMGDAW QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG+ VF+EAF+F+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSLIPILAFFISGILAPIRKGPEKLSSYESGIEPMGDAWFQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGLSVFLEAFVFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_IPOPU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Ipomoea purpurea GN=ndhC PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.502e-59
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YD+FWAFLIISS+IPILAF IS VLAPI+KGPEKLS+YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LILI GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDLFWAFLIISSLIPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILIGGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_LOBMA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lobularia maritima GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.880e-59
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS IP+LAFLIS VL+PI KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_CRUWA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Crucihimalaya wallichii GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.880e-59
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS IP+LAFLIS VL+PI KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SOLTU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Solanum tuberosum GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.003e-58
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YD FWAFLIIS ++PILAF IS VLAPI+KGPEKLS+YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDFFWAFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SOLLC (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Solanum lycopersicum GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.003e-58
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YD FWAFLIIS ++PILAF IS VLAPI+KGPEKLS+YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDFFWAFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_SOLBU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Solanum bulbocastanum GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.003e-58
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YD FWAFLIIS ++PILAF IS VLAPI+KGPEKLS+YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDFFWAFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_DRANE (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Draba nemorosa GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.003e-58
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YDIFWAFLIISS IP+LAFLIS VL+PI KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  F+EAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFLEAFIFVLILILGLVYAWRKGALEWS 120
[Close]
BLAST of CX287253 vs. ExPASy Swiss-Prot
Match: NU3C_ATRBE (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Atropa belladonna GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.003e-58
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  175 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 534
            MFLLY+YD FWAFLIIS ++PILAF IS VLAPI+KGPEKLS+YESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDFFWAFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
The following BLAST results are available for this feature:
BLAST of CX287253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_PHAVU4.502e-5990.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_JASNU4.502e-5990.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_IPOPU4.502e-5991.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_LOBMA5.880e-5990.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CRUWA5.880e-5990.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SOLTU1.003e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SOLLC1.003e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SOLBU1.003e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_DRANE1.003e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ATRBE1.003e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC01006E04SK Veg1 Citrus clementina cDNA clone C01006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287253 ID=CX287253; Name=CX287253; organism=Citrus clementina; type=EST; length=587bp
GTAGGATTCCAATCGAGAAATCTTAAAACGAGACATCACAACAAACAAAC
GAAACTTTGCGGTTCGATCAAAATGAATTGTTGTTTTGATTAACCAATTA
TCGATGACTTGACAATGAATTCCAATTTGCATCGACAAATTTGGTCTATT
TTCCACATTCATAGGAGTTTGGCTATGTTTCTGCTTTACAAATATGATAT
TTTCTGGGCATTTCTAATAATATCAAGCGTTATTCCTATTTTGGCATTTC
TAATTTCCGCAGTTTTAGCCCCGATTAACAAAGGGCCAGAGAAACTTTCT
AGTTATGAATCGGGTATCGAACCAATGGGCGATGCTTGGTTACAATTTCG
AATCCGGTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAA
CCGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTGGGGGTACCC
GTATTTATAGAAGCTTTCATTTTCATGCTTATCCTAATTGTTGGTTTAGT
TTATGCGTGGCGAAAAGGAGCATTAGAGTGGTCTTAGTTTCTGAATATTC
AGACAATAGCAAAAAAGTAAAAAAAAAAAAAAAAAAA
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